Strain Fitness in Pseudomonas putida KT2440 around PP_3166

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,586,370	-		PP_3165	0.42	-0.2
3,586,384	-		PP_3165	0.43	-0.2
3,586,386	+		PP_3165	0.44	-0.1
3,586,415	-		PP_3165	0.46	+0.5
3,586,611	+		PP_3165	0.60	+0.4
3,586,657	-		PP_3165	0.64	+0.3
3,586,836	+		PP_3165	0.77	+0.2
3,586,891	-		PP_3165	0.82	-0.0
3,586,912	-		PP_3165	0.83	+0.2
3,586,964	+				+2.2
3,587,157	+				-1.0
3,587,186	-				-1.3
3,587,197	-				-0.4
3,587,231	-				-0.2
3,587,345	+		PP_3166	0.20	-0.9
3,587,346	-		PP_3166	0.20	-0.1
3,587,492	+		PP_3166	0.36	-0.8
3,587,492	+		PP_3166	0.36	-2.6
3,587,493	-		PP_3166	0.36	+0.3
3,587,493	-		PP_3166	0.36	-1.0
3,587,657	+		PP_3166	0.54	-1.3
3,587,658	-		PP_3166	0.54	+0.9
3,587,688	-		PP_3166	0.57	-0.2
3,587,688	-		PP_3166	0.57	-0.1
3,587,759	+		PP_3166	0.65	-1.7
3,587,759	+		PP_3166	0.65	+0.1
3,587,845	+		PP_3166	0.74	+1.1
3,587,845	+		PP_3166	0.74	+0.2
3,587,884	-		PP_3166	0.79	-0.1
3,587,903	+		PP_3166	0.81	-1.0
3,587,903	+		PP_3166	0.81	-0.4
3,587,903	+		PP_3166	0.81	-2.4
3,587,904	-		PP_3166	0.81	-0.8
3,587,904	-		PP_3166	0.81	-0.6
3,587,904	-		PP_3166	0.81	-0.0
3,587,924	+		PP_3166	0.83	+1.5
3,588,295	+		PP_3167	0.11	+1.0
3,588,600	+		PP_3167	0.35	+1.4
3,588,601	-		PP_3167	0.35	-0.7
3,588,613	-		PP_3167	0.36	-2.7
3,588,703	+		PP_3167	0.43	-1.3
3,588,703	+		PP_3167	0.43	+1.3
3,588,734	-		PP_3167	0.46	-0.8
3,588,786	+		PP_3167	0.50	-0.3
3,588,998	+		PP_3167	0.66	+0.4
3,588,998	+		PP_3167	0.66	+1.2