Strain Fitness in Pseudomonas putida KT2440 around PP_3159

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,579,040	-		PP_5589	0.67	+0.2
3,579,113	+		PP_5589	0.80	+0.3
3,579,141	+		PP_5589	0.84	+0.7
3,579,148	-				+1.0
3,579,329	-				-1.5
3,579,346	-				-0.8
3,579,352	+				+1.2
3,579,359	+				-0.6
3,579,383	-				-0.2
3,579,426	-				-1.2
3,579,426	-				-0.4
3,579,426	-				-1.9
3,579,512	+				+0.9
3,579,513	-				+0.2
3,579,548	+				-0.9
3,579,600	+				-2.0
3,579,601	-				+0.3
3,579,619	+				-0.3
3,579,629	+				+1.5
3,579,630	-				+1.3
3,579,725	+				-0.8
3,579,725	+				+1.5
3,579,725	+				-1.2
3,579,726	-				+0.2
3,579,726	-				-1.6
3,579,780	+				+0.1
3,579,821	+				+0.3
3,579,822	-				+1.9
3,579,896	-				-0.5
3,579,896	-				+2.0
3,579,896	-				+1.1
3,579,896	-				-0.7
3,579,920	+				-0.8
3,579,920	+				-0.3
3,579,921	-				+1.2
3,579,921	-				-1.2
3,579,935	+				+0.7
3,579,935	+				+1.1
3,579,936	-				-0.3
3,579,952	-				+1.4
3,579,952	-				-2.1
3,579,952	-				+0.5
3,579,952	-				-0.5
3,579,952	-				-0.1
3,580,047	-		PP_3159	0.19	-1.5
3,580,047	-		PP_3159	0.19	-0.3
3,580,091	+		PP_3159	0.24	-0.8
3,580,092	-		PP_3159	0.24	+1.0
3,580,092	-		PP_3159	0.24	-1.1
3,580,138	+		PP_3159	0.28	-0.9
3,580,138	+		PP_3159	0.28	+0.1
3,580,139	-		PP_3159	0.29	-2.1
3,580,209	-		PP_3159	0.36	+0.6
3,580,421	+		PP_3159	0.58	-0.1
3,580,422	-		PP_3159	0.58	-1.1
3,580,506	+		PP_3159	0.67	+0.1
3,580,524	-		PP_3159	0.69	-1.6
3,580,524	-		PP_3159	0.69	+0.5
3,580,601	+		PP_3159	0.77	-1.8
3,580,602	-		PP_3159	0.77	-1.7
3,580,693	+		PP_3159	0.86	-0.1
3,580,694	-		PP_3159	0.87	+0.2
3,580,838	-				-0.3
3,580,838	-				+1.0
3,580,850	+				-0.2
3,580,850	+				-0.4
3,580,850	+				+0.6
3,580,851	-				+1.5
3,580,887	+				+1.5
3,580,887	+				-1.8
3,580,888	-				-1.0
3,580,893	+				-1.4
3,580,894	-				-0.8
3,580,947	+				-0.0
3,580,948	-				-0.2
3,580,977	+				-1.5
3,580,977	+				+0.8
3,580,978	-				+0.9
3,581,058	+		PP_3160	0.16	+0.5
3,581,071	+		PP_3160	0.18	+0.9
3,581,214	+		PP_3160	0.33	+2.4
3,581,214	+		PP_3160	0.33	-1.1
3,581,215	-		PP_3160	0.33	-2.1
3,581,314	-		PP_3160	0.43	-0.8
3,581,314	-		PP_3160	0.43	-0.5
3,581,314	-		PP_3160	0.43	+0.0
3,581,319	+		PP_3160	0.44	+0.6
3,581,385	+		PP_3160	0.51	+1.0
3,581,421	-		PP_3160	0.55	+1.4
3,581,421	-		PP_3160	0.55	-0.2
3,581,454	+		PP_3160	0.58	-0.5
3,581,455	-		PP_3160	0.58	+1.0
3,581,525	+		PP_3160	0.66	-0.5
3,581,584	+		PP_3160	0.72	-1.2
3,581,585	-		PP_3160	0.72	-0.4
3,581,716	+		PP_3160	0.86	+0.6
3,581,717	-		PP_3160	0.86	+0.1
3,581,717	-		PP_3160	0.86	-2.0
3,581,717	-		PP_3160	0.86	-0.5
3,581,717	-		PP_3160	0.86	+1.9
3,581,717	-		PP_3160	0.86	+0.5
3,581,717	-		PP_3160	0.86	+0.0
3,581,717	-		PP_3160	0.86	+1.7
3,581,767	+				-2.0