Strain Fitness in Pseudomonas putida KT2440 around PP_3152

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,570,087	-		PP_3151	0.44	-1.0
3,570,359	+		PP_3151	0.63	-0.6
3,570,374	-		PP_3151	0.65	+0.1
3,570,398	+		PP_3151	0.66	+0.1
3,570,399	-		PP_3151	0.66	+1.8
3,570,399	-		PP_3151	0.66	-1.4
3,570,580	+		PP_3151	0.79	-0.1
3,570,580	+		PP_3151	0.79	-1.4
3,570,581	-		PP_3151	0.80	-1.8
3,570,581	-		PP_3151	0.80	+0.2
3,570,696	-		PP_3151	0.88	-0.0
3,570,794	+				-0.5
3,570,905	+				+0.3
3,570,906	-				-0.7
3,570,906	-				+0.2
3,570,906	-				-0.8
3,570,935	+				+0.6
3,571,106	-		PP_3152	0.15	-0.2
3,571,106	-		PP_3152	0.15	+1.0
3,571,302	+		PP_3152	0.38	+0.0
3,571,303	-		PP_3152	0.38	-1.2
3,571,303	-		PP_3152	0.38	-1.3
3,571,438	+		PP_3152	0.54	-0.1
3,571,439	-		PP_3152	0.54	-0.4
3,571,484	+		PP_3152	0.59	-1.0
3,571,485	-		PP_3152	0.59	-0.1
3,571,485	-		PP_3152	0.59	+0.8
3,571,485	-		PP_3152	0.59	-0.9
3,571,485	-		PP_3152	0.59	-0.2
3,571,485	-		PP_3152	0.59	+1.3
3,571,527	+		PP_3152	0.64	-0.2
3,571,528	-		PP_3152	0.64	-2.3
3,571,528	-		PP_3152	0.64	-0.7
3,571,624	-		PP_3152	0.75	-2.1
3,571,747	-		PP_3152	0.89	-1.7
3,571,765	+				-1.7
3,571,778	+				-0.9
3,571,779	-				+1.5
3,571,779	-				-0.1
3,571,929	+				+0.1
3,571,929	+				-1.7
3,571,929	+				-1.4
3,571,930	-				-1.4
3,571,930	-				+0.8
3,571,932	+				-0.0
3,571,932	+				-0.4
3,571,932	+				+1.1
3,571,932	+				+0.2
3,571,933	-				+0.8
3,571,933	-				+2.1
3,571,933	-				-0.4
3,571,933	-				+0.2
3,571,933	-				-1.9
3,571,961	+				-1.7
3,571,962	-				-0.9
3,571,962	-				-0.3
3,571,980	+				+1.0
3,571,981	-				+0.4
3,571,981	-				-0.7
3,572,179	+		PP_3153	0.48	+0.9
3,572,179	+		PP_3153	0.48	+1.2
3,572,179	+		PP_3153	0.48	-0.8
3,572,179	+		PP_3153	0.48	-0.4
3,572,179	+		PP_3153	0.48	+1.0
3,572,180	-		PP_3153	0.48	-0.4
3,572,257	+		PP_3153	0.66	-0.6
3,572,257	+		PP_3153	0.66	+0.9
3,572,258	-		PP_3153	0.66	-1.4
3,572,289	+		PP_3153	0.73	+0.4
3,572,289	+		PP_3153	0.73	+0.6
3,572,289	+		PP_3153	0.73	-1.6
3,572,290	-		PP_3153	0.73	-0.4
3,572,290	-		PP_3153	0.73	-0.2
3,572,314	-		PP_3153	0.79	-1.1
3,572,314	-		PP_3153	0.79	-0.8
3,572,396	+				-0.3
3,572,507	-				-0.4
3,572,513	+				+1.5
3,572,513	+				-0.0
3,572,513	+				+0.1
3,572,522	+				-0.7
3,572,569	-				-0.4
3,572,576	-				-1.6
3,572,675	+				+1.7
3,572,675	+				+0.7
3,572,694	-				-1.9
3,572,782	+		PP_3154	0.23	+1.4
3,572,782	+		PP_3154	0.23	+1.0
3,572,782	+		PP_3154	0.23	+0.1
3,572,783	-		PP_3154	0.23	+1.1
3,572,783	-		PP_3154	0.23	+0.3