Strain Fitness in Pseudomonas putida KT2440 around PP_3145

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,560,757	-		PP_3144	0.37	-0.9
3,561,097	+		PP_3144	0.62	+0.1
3,561,097	+		PP_3144	0.62	+0.4
3,561,097	+		PP_3144	0.62	+0.4
3,561,152	+		PP_3144	0.66	+0.8
3,561,152	+		PP_3144	0.66	+0.5
3,561,155	+		PP_3144	0.66	-1.0
3,561,155	+		PP_3144	0.66	+0.6
3,561,155	+		PP_3144	0.66	-0.5
3,561,155	+		PP_3144	0.66	+0.4
3,561,155	+		PP_3144	0.66	-0.7
3,561,156	-		PP_3144	0.66	-1.6
3,561,156	-		PP_3144	0.66	+1.1
3,561,548	-				+0.5
3,561,572	+				+0.3
3,561,573	-				+0.3
3,561,573	-				+1.5
3,561,627	+				+0.7
3,561,857	+		PP_3145	0.18	+0.7
3,561,858	-		PP_3145	0.18	+1.2
3,561,975	+		PP_3145	0.32	+1.3
3,561,994	+		PP_3145	0.35	-0.5
3,562,138	+		PP_3145	0.52	-0.1
3,562,197	+		PP_3145	0.59	-1.3
3,562,197	+				+1.2
3,562,197	+		PP_3145	0.59	+0.1
3,562,207	+		PP_3145	0.60	+0.9
3,562,279	-		PP_3145	0.69	+0.7
3,562,427	+		PP_3145	0.87	+1.0
3,562,461	+				+0.3
3,562,734	-		PP_3146	0.16	-1.6
3,562,736	+				+1.5
3,562,744	-		PP_3146	0.17	-0.3
3,562,814	+		PP_3146	0.22	-2.1
3,562,847	-		PP_3146	0.25	-0.3
3,562,871	+		PP_3146	0.26	-0.9
3,562,872	-		PP_3146	0.27	-1.3
3,562,955	+		PP_3146	0.33	+0.6
3,562,955	+		PP_3146	0.33	+1.1
3,562,956	-		PP_3146	0.33	-0.0
3,562,956	-		PP_3146	0.33	+0.4
3,563,048	+		PP_3146	0.40	-0.3
3,563,048	+		PP_3146	0.40	-1.2
3,563,048	+		PP_3146	0.40	-1.1
3,563,049	-		PP_3146	0.40	+0.4
3,563,049	-		PP_3146	0.40	-1.6
3,563,049	-		PP_3146	0.40	+0.8
3,563,066	-		PP_3146	0.42	+1.5
3,563,531	+		PP_3146	0.77	-0.4