Strain Fitness in Pseudomonas putida KT2440 around PP_3140

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,554,605	+		PP_3139	0.18	+1.3
3,554,605	+		PP_3139	0.18	+0.5
3,554,606	-		PP_3139	0.18	-2.0
3,554,606	-		PP_3139	0.18	+0.2
3,554,612	+		PP_3139	0.19	-0.6
3,554,700	+		PP_3139	0.26	-1.2
3,554,784	-		PP_3139	0.33	-0.5
3,554,826	+		PP_3139	0.37	-0.9
3,554,827	-		PP_3139	0.37	-0.2
3,554,827	-		PP_3139	0.37	-0.6
3,554,834	+		PP_3139	0.37	+0.0
3,554,893	+		PP_3139	0.42	-0.3
3,554,928	+		PP_3139	0.45	+0.5
3,554,946	+		PP_3139	0.47	+0.7
3,554,946	+		PP_3139	0.47	-2.2
3,554,947	-		PP_3139	0.47	-0.2
3,554,947	-		PP_3139	0.47	+0.6
3,555,228	-		PP_3139	0.70	-0.6
3,555,366	+		PP_3139	0.82	+2.7
3,555,366	+		PP_3139	0.82	-0.1
3,555,366	+		PP_3139	0.82	+1.0
3,555,366	+		PP_3139	0.82	+2.1
3,555,366	+		PP_3139	0.82	+1.3
3,555,366	+		PP_3139	0.82	+1.2
3,555,366	+		PP_3139	0.82	+0.7
3,555,367	-		PP_3139	0.82	-0.2
3,555,367	-		PP_3139	0.82	-1.0
3,555,367	-		PP_3139	0.82	+0.2
3,555,367	-		PP_3139	0.82	+0.5
3,555,367	-		PP_3139	0.82	-2.2
3,555,367	-		PP_3139	0.82	-1.2
3,555,367	-		PP_3139	0.82	-0.1
3,555,370	+		PP_3139	0.82	-0.9
3,555,371	-		PP_3139	0.82	-1.7
3,555,485	-				-0.7
3,555,510	+				-0.5
3,555,567	+				+0.4
3,555,579	+				-0.0
3,555,580	-				-0.6
3,555,580	-				+0.1
3,555,580	-				+1.4
3,555,588	+				-0.1
3,555,588	+				-0.1
3,555,588	+				+0.9
3,555,589	-				-1.7
3,555,589	-				+0.3
3,555,589	-				-2.4
3,555,589	-				-0.9
3,555,589	-				-1.0
3,555,589	-				-0.4
3,555,594	+				+0.6
3,555,595	-				+1.4
3,555,595	-				-1.5
3,555,785	-		PP_3140	0.17	-1.5
3,555,785	-		PP_3140	0.17	-2.8
3,555,882	+		PP_3140	0.25	-1.1
3,555,882	+		PP_3140	0.25	-1.3
3,555,896	-		PP_3140	0.26	-0.9
3,555,917	+		PP_3140	0.28	+0.2
3,555,926	+		PP_3140	0.29	-2.4
3,556,065	-		PP_3140	0.40	-0.7
3,556,328	-		PP_3140	0.63	-1.3
3,556,343	-		PP_3140	0.64	+0.4
3,556,369	+		PP_3140	0.66	-1.1
3,556,448	-		PP_3140	0.73	-1.4
3,556,453	+		PP_3140	0.73	+0.1
3,556,507	-				+1.0
3,556,547	+		PP_3140	0.81	-0.9
3,556,548	-		PP_3140	0.81	-1.3
3,556,653	+				+0.1
3,556,674	-				+0.9
3,556,967	+		PP_3141	0.26	+1.4
3,556,967	+		PP_3141	0.26	-0.1
3,556,967	+		PP_3141	0.26	+0.3
3,556,968	-		PP_3141	0.26	+1.1
3,556,968	-		PP_3141	0.26	+0.6
3,556,968	-		PP_3141	0.26	-1.8
3,557,116	+		PP_3141	0.46	-0.4
3,557,117	-		PP_3141	0.46	+0.5
3,557,203	+		PP_3141	0.57	-0.2
3,557,404	+		PP_3141	0.84	+0.4
3,557,443	+		PP_3141	0.89	+0.3
3,557,443	+		PP_3141	0.89	-0.3
3,557,444	-		PP_3141	0.89	-2.0
3,557,444	-		PP_3141	0.89	+0.4
3,557,486	-				+0.3
3,557,520	-				+0.8
3,557,520	-				+0.2
3,557,581	-				-1.7
3,557,588	+				+0.9
3,557,589	-				-1.3
3,557,589	-				+0.8
3,557,634	+				-2.6
3,557,678	-				-2.1
3,557,678	-				+2.3
3,557,678	-				+0.7
3,557,678	-				-0.0
3,557,733	+				-1.0