Strain Fitness in Pseudomonas putida KT2440 around PP_3087

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,473,203	-		PP_3085	0.58	-1.9
3,473,259	+		PP_3085	0.64	-1.4
3,473,260	-		PP_3085	0.64	+1.3
3,473,633	+				-0.1
3,473,692	+		PP_3086	0.18	+0.4
3,473,693	-		PP_3086	0.18	-1.4
3,473,693	-		PP_3086	0.18	+0.6
3,473,774	-		PP_3086	0.34	+0.4
3,473,852	-		PP_3086	0.50	-2.2
3,473,904	+		PP_3086	0.60	+0.3
3,473,904	+		PP_3086	0.60	+0.6
3,473,904	+		PP_3086	0.60	+0.0
3,473,904	+		PP_3086	0.60	-1.4
3,473,904	+		PP_3086	0.60	-0.1
3,473,904	+		PP_3086	0.60	-1.0
3,473,904	+		PP_3086	0.60	+0.7
3,473,905	-		PP_3086	0.60	-0.7
3,473,905	-		PP_3086	0.60	-0.1
3,473,906	+				+2.1
3,473,907	-		PP_3086	0.60	+0.5
3,473,907	-		PP_3086	0.60	+0.0
3,473,907	-		PP_3086	0.60	-1.9
3,473,912	+		PP_3086	0.61	+1.1
3,473,912	+		PP_3086	0.61	+0.2
3,473,912	+		PP_3086	0.61	+0.4
3,473,912	+		PP_3086	0.61	-1.1
3,473,913	-		PP_3086	0.62	+0.1
3,473,913	-		PP_3086	0.62	+0.5
3,473,941	+		PP_3086	0.67	-1.4
3,474,061	+				+1.0
3,474,061	+				+0.3
3,474,062	-				+0.7
3,474,197	+				-0.1
3,474,198	-				-0.6
3,474,237	+				+0.2
3,474,238	-				+1.9
3,474,369	+				+1.7
3,474,370	-				-0.5
3,474,458	+		PP_3087	0.10	-2.0
3,474,458	+		PP_3087	0.10	-0.1
3,474,458	+		PP_3087	0.10	-2.1
3,474,458	+		PP_3087	0.10	-0.5
3,474,561	-		PP_3087	0.15	-1.2
3,474,707	+		PP_3087	0.20	-0.3
3,474,740	+		PP_3087	0.22	+0.1
3,474,741	-		PP_3087	0.22	-0.9
3,474,868	-		PP_3087	0.27	-0.8
3,474,908	+		PP_3087	0.28	-0.1
3,474,909	-		PP_3087	0.28	+1.1
3,474,994	+		PP_3087	0.32	-0.3
3,474,994	+		PP_3087	0.32	+0.1
3,474,995	-		PP_3087	0.32	-0.1
3,475,053	+		PP_3087	0.34	+0.2
3,475,138	-				+0.2
3,475,138	-		PP_3087	0.37	+0.8
3,475,277	+		PP_3087	0.43	-2.2
3,475,278	-		PP_3087	0.43	-0.7
3,475,278	-		PP_3087	0.43	-0.6
3,475,278	-		PP_3087	0.43	-1.1
3,475,278	-		PP_3087	0.43	+1.5
3,475,331	+		PP_3087	0.45	-2.4
3,475,331	+		PP_3087	0.45	-0.5
3,475,369	+		PP_3087	0.47	+0.2
3,475,369	+		PP_3087	0.47	-0.9
3,475,369	+		PP_3087	0.47	-0.3
3,475,369	+		PP_3087	0.47	+1.2
3,475,369	+		PP_3087	0.47	-1.0
3,475,370	-		PP_3087	0.47	-0.3
3,475,370	-		PP_3087	0.47	-1.9
3,475,424	+		PP_3087	0.49	+1.2
3,475,424	+		PP_3087	0.49	+1.6
3,475,425	-		PP_3087	0.49	-0.8
3,475,516	+		PP_3087	0.52	-0.2
3,475,521	-		PP_3087	0.53	+0.9
3,475,620	-		PP_3087	0.57	-1.1
3,475,883	+		PP_3087	0.67	-1.4
3,475,883	+		PP_3087	0.67	-1.0
3,475,883	+		PP_3087	0.67	-1.6
3,475,884	-		PP_3087	0.67	-1.6
3,475,884	-		PP_3087	0.67	+0.2
3,475,932	+		PP_3087	0.69	-1.3
3,475,932	+		PP_3087	0.69	-0.0
3,475,933	-		PP_3087	0.69	+0.5
3,475,933	-		PP_3087	0.69	-1.8
3,475,973	+		PP_3087	0.71	+1.0
3,475,973	+		PP_3087	0.71	-2.3
3,475,974	-		PP_3087	0.71	+0.4
3,476,121	-				+0.4
3,476,312	+		PP_3087	0.84	+0.9
3,476,312	+		PP_3087	0.84	-0.0
3,476,510	+				-0.1
3,476,510	+				-1.8
3,476,511	-				-0.6
3,476,552	+				-0.8
3,476,552	+				+0.3
3,476,552	+				-1.6
3,476,553	-				+2.1
3,476,553	-				+3.3
3,476,804	+				+0.7
3,476,845	-				-0.7
3,476,869	+				+1.8
3,476,870	-				+0.1
3,476,870	-				+0.3
3,476,996	-		PP_3088	0.11	-0.6
3,477,031	+		PP_3088	0.14	-0.9
3,477,032	-		PP_3088	0.14	-0.8
3,477,198	+		PP_3088	0.29	-0.6
3,477,199	-		PP_3088	0.29	+0.7
3,477,205	-		PP_3088	0.30	-0.8
3,477,387	-		PP_3088	0.47	-1.0
3,477,480	+		PP_3088	0.55	-0.6
3,477,480	+		PP_3088	0.55	+0.6
3,477,480	+		PP_3088	0.55	-0.1
3,477,480	+		PP_3088	0.55	-0.8
3,477,480	+		PP_3088	0.55	-0.0
3,477,480	+		PP_3088	0.55	+1.7
3,477,481	-		PP_3088	0.55	-1.3
3,477,481	-		PP_3088	0.55	+1.2
3,477,481	-		PP_3088	0.55	+0.5
3,477,500	-		PP_3088	0.57	-2.0
3,477,623	-		PP_3088	0.68	-1.3