Strain Fitness in Pseudomonas putida KT2440 around PP_3082

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,466,483	-		PP_3081	0.28	-0.9
3,466,525	-		PP_3081	0.37	-1.8
3,466,623	+		PP_3081	0.57	+0.6
3,466,623	+		PP_3081	0.57	-0.3
3,466,624	-		PP_3081	0.58	-0.6
3,467,795	+		PP_3082	0.33	+0.6
3,467,961	+		PP_3082	0.46	+1.4
3,467,961	+		PP_3082	0.46	-0.2
3,467,962	-		PP_3082	0.46	-0.9
3,467,979	+		PP_3082	0.47	-1.8
3,467,979	+		PP_3082	0.47	-0.6
3,467,980	-		PP_3082	0.47	-2.2
3,467,980	-		PP_3082	0.47	-0.3
3,468,216	+		PP_3082	0.64	-1.8
3,468,231	+		PP_3082	0.65	+0.3
3,468,231	+				+0.5
3,468,232	-		PP_3082	0.65	-2.1
3,468,335	+		PP_3082	0.73	+1.0
3,468,336	-		PP_3082	0.73	-0.2
3,468,361	-		PP_3082	0.75	-1.0
3,468,361	-		PP_3082	0.75	-0.9
3,468,414	+		PP_3082	0.79	+0.7
3,468,486	+		PP_3082	0.84	-1.8
3,468,486	+		PP_3082	0.84	-0.5
3,468,486	+		PP_3082	0.84	+1.0
3,468,486	+		PP_3082	0.84	-0.1
3,468,487	-		PP_3082	0.84	-1.8
3,468,487	-		PP_3082	0.84	+0.5
3,468,637	+				+0.9
3,468,637	+				+0.7
3,468,637	+				-0.3
3,468,637	+				+0.6
3,468,637	+				-0.7
3,468,637	+				-0.5
3,468,637	+				-0.7
3,468,637	+				+2.6
3,468,637	+				-0.6
3,468,637	+				+1.2
3,468,637	+				+0.3
3,468,637	+				-0.7
3,468,638	-				-1.2
3,468,638	-				+0.6
3,468,638	-				+0.1
3,468,638	-				+0.1
3,468,638	-				-0.5
3,468,638	-				-2.7
3,468,638	-				+0.6
3,468,638	-				-0.3
3,468,641	+				-0.7
3,468,642	-				-0.3
3,468,642	-				+0.7
3,468,642	-				-2.4
3,468,642	-				-0.1
3,468,642	-				-0.4
3,468,791	-				-1.6
3,469,034	+				+1.8
3,469,034	+				+0.8
3,469,034	+				-0.8
3,469,034	+				-2.5
3,469,035	-				-0.0
3,469,035	-				+0.6
3,469,176	+		PP_3083	0.13	+0.1
3,469,176	+		PP_3083	0.13	-1.9
3,469,397	+		PP_3083	0.38	-0.2
3,469,397	+		PP_3083	0.38	-0.1
3,469,398	-		PP_3083	0.38	+0.4
3,469,398	-		PP_3083	0.38	+0.2
3,469,398	-		PP_3083	0.38	-0.4
3,469,526	-		PP_3083	0.53	-1.0
3,469,526	-		PP_3083	0.53	-1.6