Strain Fitness in Pseudomonas putida KT2440 around PP_3063

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,443,699	+		PP_3062	0.75	+0.4
3,443,699	+		PP_3062	0.75	-1.2
3,443,700	-		PP_3062	0.75	-1.2
3,443,700	-		PP_3062	0.75	-0.4
3,443,700	-		PP_3062	0.75	+0.3
3,443,700	-		PP_3062	0.75	-0.4
3,443,921	+		PP_3062	0.82	+0.3
3,443,921	+		PP_3062	0.82	+1.3
3,443,921	+		PP_3062	0.82	-0.7
3,444,099	+		PP_3062	0.87	-0.2
3,444,100	-		PP_3062	0.87	-2.2
3,444,304	+				-0.2
3,444,304	+				+1.3
3,444,361	+				-1.4
3,444,388	+				-0.8
3,444,510	-				+0.6
3,444,520	+				-1.2
3,444,520	+				-1.1
3,444,521	-				+0.4
3,444,521	-				+0.3
3,444,521	-				-0.2
3,444,527	+				-1.8
3,444,527	+				-0.4
3,444,528	-				+0.6
3,444,676	-		PP_3063	0.18	-0.9
3,444,761	+		PP_3063	0.28	+1.2
3,444,761	+		PP_3063	0.28	+1.2
3,444,762	-		PP_3063	0.28	+1.9
3,444,762	-		PP_3063	0.28	+0.1
3,444,762	-		PP_3063	0.28	+0.2
3,444,996	-		PP_3063	0.56	+0.4
3,444,996	-		PP_3063	0.56	-0.2
3,444,998	+		PP_3063	0.56	-1.6
3,444,999	-		PP_3063	0.57	-1.0
3,445,154	-		PP_3063	0.75	-0.6
3,445,322	-				+1.2
3,445,341	-				-0.7
3,445,341	-				+0.9
3,445,341	-				-0.7
3,445,401	+		PP_3064	0.29	-0.3
3,445,402	-		PP_3064	0.29	-1.7
3,445,402	-		PP_3064	0.29	+0.1
3,445,620	-				+0.1
3,445,771	+		PP_3065	0.16	+0.1
3,445,829	+		PP_3065	0.21	-0.2
3,445,829	+		PP_3065	0.21	-2.3
3,445,829	+		PP_3065	0.21	-2.6
3,445,829	+		PP_3065	0.21	-0.6
3,445,830	-		PP_3065	0.21	+1.1
3,445,830	-		PP_3065	0.21	+0.2
3,445,925	-		PP_3065	0.30	-1.3
3,446,052	-		PP_3065	0.43	+1.0
3,446,182	+		PP_3065	0.55	+0.3
3,446,182	+		PP_3065	0.55	-1.2
3,446,183	-		PP_3065	0.55	-0.4
3,446,189	+		PP_3065	0.56	-0.5
3,446,189	+		PP_3065	0.56	-1.8
3,446,189	+		PP_3065	0.56	-1.0
3,446,190	-		PP_3065	0.56	+0.6
3,446,190	-		PP_3065	0.56	-1.8
3,446,190	-		PP_3065	0.56	-1.6