Strain Fitness in Pseudomonas putida KT2440 around PP_3048

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,431,486	+		PP_3047	0.13	-1.3
3,431,486	+		PP_3047	0.13	+0.8
3,431,487	-		PP_3047	0.13	+0.2
3,431,487	-		PP_3047	0.13	+0.6
3,431,744	+		PP_3047	0.39	+0.2
3,431,745	-		PP_3047	0.39	+1.4
3,431,819	+		PP_3047	0.46	+0.5
3,431,819	+		PP_3047	0.46	+0.5
3,431,819	+		PP_3047	0.46	+0.1
3,431,819	+		PP_3047	0.46	-2.0
3,431,819	+		PP_3047	0.46	-0.9
3,431,820	-		PP_3047	0.46	+1.5
3,431,820	-		PP_3047	0.46	-0.0
3,431,823	+		PP_3047	0.47	-0.5
3,431,823	+		PP_3047	0.47	+1.3
3,431,823	+		PP_3047	0.47	-0.8
3,431,823	+		PP_3047	0.47	+0.9
3,431,823	+		PP_3047	0.47	-0.2
3,431,823	+		PP_3047	0.47	+1.8
3,431,824	-		PP_3047	0.47	-0.6
3,431,880	-		PP_3047	0.52	-1.0
3,431,942	+		PP_3047	0.59	+0.6
3,431,943	-		PP_3047	0.59	+0.3
3,432,012	-		PP_3047	0.66	-1.6
3,432,021	+		PP_3047	0.67	+0.6
3,432,022	-		PP_3047	0.67	+0.9
3,432,022	-		PP_3047	0.67	-0.4
3,432,022	-				+1.4
3,432,022	-		PP_3047	0.67	+0.3
3,432,022	-		PP_3047	0.67	-1.1
3,432,022	-		PP_3047	0.67	-0.5
3,432,022	-		PP_3047	0.67	-0.8
3,432,022	-		PP_3047	0.67	+0.2
3,432,036	+		PP_3047	0.68	-1.2
3,432,037	-		PP_3047	0.68	+2.0
3,432,207	+		PP_3047	0.85	-2.3
3,432,216	-		PP_3047	0.86	+0.9
3,432,216	-		PP_3047	0.86	+0.7
3,432,240	+		PP_3047	0.89	+1.0
3,432,243	+		PP_3047	0.89	-1.2
3,432,280	+				-1.0
3,432,317	+				-2.6
3,432,602	+		PP_3048	0.79	+1.1
3,432,603	-				+2.2
3,432,603	-		PP_3048	0.79	-0.6
3,432,603	-		PP_3048	0.79	+0.9
3,432,642	+				-2.6
3,432,643	-				+1.7
3,432,643	-				+0.7
3,432,666	+				-0.9
3,432,667	-				+0.5
3,432,679	-				+0.3
3,432,679	-				+0.4
3,432,679	-				-0.7
3,432,682	+				-1.8
3,432,682	+				+1.1
3,432,852	-		PP_3049	0.28	-0.2
3,432,852	-		PP_3049	0.28	-1.5
3,432,852	-		PP_3049	0.28	-1.5
3,432,873	+		PP_3049	0.31	-0.1
3,432,873	+		PP_3049	0.31	+0.1
3,432,873	+		PP_3049	0.31	-1.1
3,433,021	+		PP_3049	0.53	+0.3
3,433,048	+		PP_3049	0.57	+0.4
3,433,077	+		PP_3049	0.62	+0.6
3,433,125	-		PP_3049	0.69	-1.6
3,433,262	+		PP_3049	0.90	+0.9
3,433,262	+		PP_3049	0.90	-0.5
3,433,262	+		PP_3049	0.90	-0.0
3,433,303	+				-1.4
3,433,355	+				+0.1
3,433,403	+		PP_3050	0.15	+0.7
3,433,404	-		PP_3050	0.15	-0.9
3,433,562	-		PP_3050	0.45	-0.9
3,433,562	-		PP_3050	0.45	-0.7
3,433,575	+		PP_3050	0.48	+0.7
3,433,575	+		PP_3050	0.48	+0.8
3,433,575	+		PP_3050	0.48	-0.4
3,433,575	+		PP_3050	0.48	+0.1
3,433,575	+		PP_3050	0.48	-0.6
3,433,575	+		PP_3050	0.48	-1.1
3,433,576	-		PP_3050	0.48	+2.3
3,433,576	-		PP_3050	0.48	-2.2
3,433,576	-		PP_3050	0.48	+2.1
3,433,576	-		PP_3050	0.48	+0.9
3,433,576	-		PP_3050	0.48	-0.8