Strain Fitness in Pseudomonas putida KT2440 around PP_3037

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,420,727	-				-0.7
3,420,730	-				-0.1
3,420,730	-				-0.7
3,420,758	-		PP_5554	0.21	+1.1
3,420,791	-		PP_5554	0.39	-1.9
3,420,791	-		PP_5554	0.39	+1.4
3,420,800	-		PP_5554	0.44	-0.4
3,420,800	-		PP_5554	0.44	-1.0
3,420,800	-		PP_5554	0.44	-0.1
3,420,800	-		PP_5554	0.44	+0.2
3,420,800	-		PP_5554	0.44	-0.0
3,420,800	-		PP_5554	0.44	+1.0
3,420,800	-		PP_5554	0.44	-0.2
3,420,800	-		PP_5554	0.44	+0.3
3,420,881	-		PP_5554	0.89	-1.4
3,420,885	-				+1.1
3,420,902	-				+0.3
3,420,902	-				-0.2
3,420,902	-				-1.4
3,420,902	-				+1.0
3,420,902	-				+0.1
3,420,933	+				-2.3
3,420,977	-				-1.0
3,421,054	+		PP_3036	0.45	+1.2
3,421,055	-		PP_3036	0.46	-1.0
3,421,055	-		PP_3036	0.46	+1.0
3,421,055	-		PP_3036	0.46	+1.1
3,421,055	-		PP_3036	0.46	+0.0
3,421,062	+		PP_3036	0.49	-2.3
3,421,063	-		PP_3036	0.50	-1.7
3,421,194	-		PP_5555	0.13	-2.0
3,421,211	+		PP_5555	0.17	-0.1
3,421,211	+		PP_5555	0.17	+0.1
3,421,300	+		PP_5555	0.34	-1.3
3,421,300	+		PP_5555	0.34	-2.1
3,421,301	-		PP_5555	0.34	+0.0
3,421,301	-		PP_5555	0.34	-0.7
3,421,301	-		PP_5555	0.34	-0.4
3,421,415	+		PP_5555	0.56	-0.6
3,421,415	+		PP_5555	0.56	+0.6
3,421,415	+		PP_5555	0.56	+0.7
3,421,415	+		PP_5555	0.56	-1.6
3,421,416	-		PP_5555	0.56	-0.0
3,421,416	-		PP_5555	0.56	-1.2
3,421,417	+		PP_5555	0.56	-0.6
3,421,417	+		PP_5555	0.56	+0.6
3,421,417	+		PP_5555	0.56	-1.1
3,421,417	+		PP_5555	0.56	-1.0
3,421,418	-		PP_5555	0.57	-0.9
3,421,418	-		PP_5555	0.57	+0.6
3,421,418	-		PP_5555	0.57	+1.2
3,421,427	-		PP_5555	0.58	-1.9
3,421,502	-		PP_5555	0.73	-0.3
3,421,589	+		PP_5555	0.90	-2.6
3,421,589	+		PP_5555	0.90	-0.8
3,421,590	-		PP_5555	0.90	-0.1
3,421,604	+				+0.9
3,421,604	+				+0.5
3,421,605	-				-0.8
3,421,644	-				+1.0
3,421,687	+		PP_3037	0.24	-2.6
3,421,687	+		PP_3037	0.24	-0.9
3,421,688	-		PP_3037	0.24	-1.9
3,421,843	-				+1.6
3,421,851	+				+0.4
3,421,851	+				-2.3
3,421,852	-				+0.7
3,421,852	-				-0.2
3,421,877	-				-0.9
3,421,966	+				+1.5
3,421,967	-				+0.9
3,421,967	-				-0.1
3,421,967	-				-1.3
3,422,196	+		PP_3038	0.16	-0.2
3,422,221	+				+0.8
3,422,222	-		PP_3038	0.17	+1.4
3,422,375	-		PP_3038	0.24	+0.1
3,422,375	-		PP_3038	0.24	+1.3
3,422,464	+		PP_3038	0.28	-2.6
3,422,553	+		PP_3038	0.32	-0.1
3,422,553	+		PP_3038	0.32	-1.3
3,422,554	-		PP_3038	0.32	+0.9
3,422,554	-		PP_3038	0.32	+0.7
3,422,554	-		PP_3038	0.32	-1.0
3,422,554	-		PP_3038	0.32	-0.3
3,422,554	-		PP_3038	0.32	-0.1
3,422,588	+		PP_3038	0.34	-1.8
3,422,589	-		PP_3038	0.34	-1.6
3,422,690	+		PP_3038	0.38	-0.8
3,422,691	-		PP_3038	0.38	-0.4
3,422,725	-		PP_3038	0.40	+0.4