Strain Fitness in Pseudomonas putida KT2440 around PP_3001

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,395,402	+				+1.3
3,395,463	-				-2.0
3,395,580	-		PP_2999	0.34	+0.5
3,395,902	+		PP_3000	0.14	+2.1
3,395,902	+		PP_3000	0.14	-0.6
3,395,903	-		PP_3000	0.14	-0.3
3,395,903	-		PP_3000	0.14	+0.1
3,395,933	-		PP_3000	0.21	-0.3
3,395,981	-		PP_3000	0.31	-1.3
3,395,981	-		PP_3000	0.31	-1.9
3,396,287	+				-3.1
3,396,288	-				-2.2
3,396,334	-				-0.7
3,396,357	+				-0.3
3,396,357	+				-0.4
3,396,357	+				-0.7
3,396,586	-		PP_3001	0.24	-2.7
3,396,657	+		PP_3001	0.30	-0.6
3,396,658	-		PP_3001	0.30	+0.1
3,396,788	+		PP_3001	0.40	+0.1
3,396,807	+				+2.2
3,396,808	-		PP_3001	0.42	-1.7
3,396,808	-		PP_3001	0.42	-1.3
3,396,808	-		PP_3001	0.42	-0.9
3,396,808	-		PP_3001	0.42	-0.2
3,396,897	+		PP_3001	0.49	-0.8
3,396,898	-		PP_3001	0.49	+1.0
3,396,924	+		PP_3001	0.51	+0.4
3,396,939	+		PP_3001	0.53	+1.2
3,396,940	-		PP_3001	0.53	-0.3
3,396,940	-		PP_3001	0.53	+0.6
3,396,940	-		PP_3001	0.53	-2.6
3,397,006	-		PP_3001	0.58	-1.1
3,397,389	-		PP_3001	0.89	+0.0
3,397,405	+				+1.0
3,397,502	+				-1.7
3,397,502	+				+0.8
3,397,619	+		PP_3002	0.12	-0.0
3,397,662	+		PP_3002	0.17	+1.0
3,397,663	-		PP_3002	0.17	+0.6
3,398,153	+		PP_3002	0.77	-0.7
3,398,336	+				+0.4
3,398,356	+				+0.6
3,398,356	+				-0.5
3,398,356	+				-0.0
3,398,356	+				+0.3
3,398,356	+				-2.1
3,398,357	-				-1.3
3,398,357	-				+0.1
3,398,357	-				-2.2
3,398,413	-		PP_3003	0.16	-1.0