Strain Fitness in Pseudomonas putida KT2440 around PP_2983

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,380,503	-		PP_2982	0.17	-0.3
3,380,564	+		PP_2982	0.24	-1.8
3,380,564	+		PP_2982	0.24	-1.2
3,380,565	-		PP_2982	0.24	-1.3
3,380,565	-				+0.7
3,380,609	+		PP_2982	0.28	-0.5
3,380,609	+		PP_2982	0.28	+1.1
3,380,609	+		PP_2982	0.28	-2.4
3,380,610	-		PP_2982	0.28	-0.3
3,380,882	-		PP_2982	0.55	-1.1
3,380,882	-		PP_2982	0.55	+0.4
3,380,984	+		PP_2982	0.66	-0.4
3,380,984	+		PP_2982	0.66	-0.2
3,380,985	-		PP_2982	0.66	-1.4
3,380,985	-		PP_2982	0.66	+0.3
3,381,083	+		PP_2982	0.75	-0.4
3,381,084	-		PP_2982	0.76	-2.5
3,381,267	+				+0.3
3,381,268	-				-0.7
3,381,268	-				+0.1
3,381,268	-				+1.4
3,381,282	-				+0.5
3,381,282	-				-1.0
3,381,282	-				-0.4
3,381,374	+				+0.0
3,381,374	+				-1.2
3,381,374	+				-0.2
3,381,375	-				-1.6
3,381,375	-				-1.8
3,381,421	+		PP_2983	0.10	-1.8
3,381,421	-		PP_2983	0.10	+1.4
3,381,444	+		PP_2983	0.14	+2.1
3,381,445	-		PP_2983	0.14	+2.2
3,381,553	-		PP_2983	0.30	-0.1
3,381,620	-		PP_2983	0.40	+2.2
3,381,637	+		PP_2983	0.43	-0.9
3,381,638	-		PP_2983	0.43	+1.0
3,381,685	+		PP_2983	0.50	+0.7
3,381,686	-		PP_2983	0.50	+0.7
3,381,686	-		PP_2983	0.50	+0.3
3,381,718	+		PP_2983	0.55	+0.1
3,381,797	+		PP_2983	0.67	+0.9
3,381,797	+		PP_2983	0.67	+0.4
3,381,797	+		PP_2983	0.67	+0.2
3,381,797	+		PP_2983	0.67	-0.4
3,381,843	+		PP_2983	0.74	+1.0
3,381,843	+		PP_2983	0.74	-1.0
3,381,891	+		PP_2983	0.82	+0.6
3,381,916	+		PP_2983	0.85	-0.5
3,381,916	+		PP_2983	0.85	+0.0
3,382,009	+				+0.5
3,382,445	+				-1.6
3,382,446	-				+1.1
3,382,446	-				-0.4
3,382,541	-		PP_5545	0.24	-0.1
3,382,555	+		PP_5545	0.33	+0.0
3,382,555	+		PP_5545	0.33	+0.0
3,382,555	+		PP_5545	0.33	+1.1
3,382,555	+		PP_5545	0.33	-0.2
3,382,622	+		PP_5545	0.73	-0.6
3,382,623	-		PP_5545	0.73	+0.2
3,382,642	+		PP_5545	0.85	-0.5
3,382,642	+		PP_5545	0.85	-1.0
3,382,643	-		PP_5545	0.85	+0.9
3,382,647	-		PP_5545	0.88	-0.4
3,382,662	-				-0.2
3,382,665	+				-1.1
3,382,666	-				-0.2
3,382,666	-				-1.0
3,382,704	-				-1.2
3,382,707	+				+0.5
3,382,707	+				-1.6
3,382,708	-				+1.0
3,382,708	-				+0.1
3,382,740	-				-0.6
3,382,743	+				+0.6
3,382,751	+				+0.3
3,382,756	+				-0.9
3,382,756	+				-0.7
3,382,756	+				-0.0
3,382,757	-				-0.7
3,382,776	-				+0.4
3,382,784	+				-0.1
3,382,802	-				-2.7
3,382,803	+				-1.6
3,382,803	+				-0.9
3,382,863	+				-0.2