Strain Fitness in Pseudomonas putida KT2440 around PP_2941

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,343,486	+				+0.3
3,343,486	+				-0.4
3,343,504	-				-0.9
3,343,525	+				-0.2
3,343,525	+				+1.2
3,343,555	-				-0.5
3,343,586	+				-2.5
3,343,659	-		PP_5541	0.18	+1.1
3,343,741	+		PP_5541	0.43	-2.0
3,343,741	+		PP_5541	0.43	+1.4
3,343,746	-		PP_5541	0.45	-1.0
3,343,779	+		PP_5541	0.55	+0.8
3,343,780	-		PP_5541	0.55	+1.4
3,343,780	-		PP_5541	0.55	-0.6
3,343,780	-		PP_5541	0.55	+0.4
3,343,970	+				+1.5
3,343,970	+				+0.8
3,343,971	-				-0.0
3,344,045	-		PP_5542	0.16	-1.5
3,344,045	-		PP_5542	0.16	+0.3
3,344,056	+		PP_5542	0.20	+0.3
3,344,057	-		PP_5542	0.20	-2.8
3,344,066	-		PP_5542	0.24	-0.1
3,344,133	-		PP_5542	0.49	-1.1
3,344,231	-		PP_5542	0.85	-2.1
3,344,231	-		PP_5542	0.85	+1.5
3,344,410	+				-0.1
3,344,411	-				-1.1
3,344,545	-		PP_2941	0.26	-1.6
3,344,545	-		PP_2941	0.26	+1.6
3,344,656	+		PP_2941	0.40	+0.9
3,344,656	+		PP_2941	0.40	+2.0
3,344,657	-		PP_2941	0.40	-0.0
3,344,657	-		PP_2941	0.40	-0.3
3,344,660	-		PP_2941	0.40	+0.3
3,344,660	-		PP_2941	0.40	-1.2
3,344,698	+		PP_2941	0.45	+0.7
3,344,699	-		PP_2941	0.45	+0.6
3,344,903	-		PP_2941	0.71	-0.4
3,344,977	-		PP_2941	0.81	+0.0
3,345,035	+		PP_2941	0.88	+1.6
3,345,162	+				+0.8
3,345,164	+				-0.3
3,345,164	+				-0.5
3,345,164	+				-1.2
3,345,164	+				-0.4
3,345,165	-				+0.5
3,345,165	-				-0.7
3,345,203	+				+0.4
3,345,203	+				+1.6
3,345,203	+				+0.6
3,345,203	+				-0.7
3,345,204	-				+0.5
3,345,204	-				+0.2
3,345,204	-				+0.9
3,345,204	-				+0.8
3,345,344	+		PP_2942	0.16	-0.6
3,345,344	+		PP_2942	0.16	-1.7
3,345,345	-		PP_2942	0.16	-0.7
3,345,433	+		PP_2942	0.22	+0.4
3,345,433	+		PP_2942	0.22	-1.4
3,345,433	+		PP_2942	0.22	+0.2
3,345,434	-		PP_2942	0.22	-2.2
3,345,434	-		PP_2942	0.22	-0.6
3,345,448	+		PP_2942	0.23	+1.5
3,345,448	+		PP_2942	0.23	-2.1
3,345,563	+		PP_2942	0.32	+0.6
3,345,563	+		PP_2942	0.32	+0.1
3,345,564	-		PP_2942	0.32	+0.3
3,345,771	+		PP_2942	0.47	-0.3
3,345,772	-		PP_2942	0.47	+0.5
3,345,772	-		PP_2942	0.47	+1.0
3,345,772	-		PP_2942	0.47	-0.8
3,345,778	+		PP_2942	0.47	+1.7
3,345,778	+		PP_2942	0.47	+0.4
3,345,779	-		PP_2942	0.47	-0.1
3,345,836	+		PP_2942	0.52	+0.8
3,345,836	+		PP_2942	0.52	-0.1
3,345,837	-		PP_2942	0.52	+1.3
3,345,841	+		PP_2942	0.52	+0.8
3,345,841	+		PP_2942	0.52	-1.9
3,345,841	+		PP_2942	0.52	+0.4
3,345,842	-		PP_2942	0.52	-0.1
3,345,842	-		PP_2942	0.52	+0.3
3,345,842	-		PP_2942	0.52	-1.6
3,345,842	-		PP_2942	0.52	-0.0
3,345,937	+		PP_2942	0.59	-0.3
3,345,937	+		PP_2942	0.59	-1.7
3,345,938	-		PP_2942	0.59	+0.7
3,345,938	-		PP_2942	0.59	-2.1
3,345,938	-		PP_2942	0.59	-0.1
3,345,938	-		PP_2942	0.59	-1.2
3,345,938	-		PP_2942	0.59	-1.9
3,345,938	-		PP_2942	0.59	-1.6
3,345,938	-		PP_2942	0.59	-1.3