Strain Fitness in Pseudomonas putida KT2440 around PP_2938

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,340,520	+		PP_2936	0.81	-2.1
3,340,524	+		PP_2936	0.81	-1.2
3,340,524	+		PP_2936	0.81	-2.6
3,340,525	-		PP_2936	0.81	+0.9
3,340,525	-		PP_2936	0.81	-1.1
3,340,601	+		PP_2936	0.86	+0.3
3,340,818	+				-0.3
3,340,857	+				+1.0
3,340,858	-				-0.1
3,340,861	+				-0.1
3,340,963	+		PP_2937	0.25	-1.8
3,340,964	-		PP_2937	0.25	+0.0
3,340,964	-		PP_2937	0.25	+0.6
3,340,967	+		PP_2937	0.25	+0.7
3,340,968	-		PP_2937	0.26	+0.3
3,340,968	-		PP_2937	0.26	-0.8
3,341,040	+				+0.2
3,341,040	+		PP_2937	0.43	+0.3
3,341,041	-		PP_2937	0.43	+0.0
3,341,051	-		PP_2937	0.45	+0.2
3,341,068	+		PP_2937	0.50	+1.6
3,341,069	-		PP_2937	0.50	+2.1
3,341,069	-		PP_2937	0.50	+0.5
3,341,126	+		PP_2937	0.63	-2.0
3,341,127	-		PP_2937	0.64	-0.6
3,341,163	-		PP_2937	0.72	+0.7
3,341,163	-		PP_2937	0.72	-0.6
3,341,268	+				+0.3
3,341,345	-				+0.3
3,341,395	+				+1.4
3,341,395	+				+1.9
3,341,395	+				+0.8
3,341,396	-				-0.5
3,341,456	+				-0.2
3,341,456	+				+0.2
3,341,457	-				+0.2
3,341,457	-				-1.4
3,341,514	+				+1.8
3,341,581	-		PP_2938	0.18	-2.0
3,341,670	-		PP_2938	0.31	-0.2
3,341,711	+		PP_2938	0.37	+0.0
3,341,711	+		PP_2938	0.37	+1.3
3,341,712	-		PP_2938	0.37	+0.3
3,341,712	-		PP_2938	0.37	+1.7
3,341,712	-		PP_2938	0.37	+0.3
3,341,712	-		PP_2938	0.37	-0.6
3,341,811	+		PP_2938	0.52	-0.5
3,341,811	+		PP_2938	0.52	+0.6
3,341,812	-				+1.6
3,341,812	-		PP_2938	0.52	-0.1
3,341,812	-		PP_2938	0.52	-1.4
3,341,886	+		PP_2938	0.63	-0.8
3,341,886	+		PP_2938	0.63	-0.5
3,341,887	-		PP_2938	0.63	-1.2
3,341,887	-		PP_2938	0.63	-0.3
3,341,887	-		PP_2938	0.63	-2.1
3,341,887	-		PP_2938	0.63	+0.4
3,341,887	-		PP_2938	0.63	+0.3
3,341,913	-		PP_2938	0.67	+0.3
3,341,913	-		PP_2938	0.67	-0.5
3,341,986	-				+1.3
3,342,021	+		PP_2938	0.82	-0.4
3,342,021	+		PP_2938	0.82	+0.7
3,342,021	+		PP_2938	0.82	-1.3
3,342,022	-		PP_2938	0.83	-2.2
3,342,022	-		PP_2938	0.83	-0.5
3,342,022	-		PP_2938	0.83	-0.7
3,342,226	+				+1.2
3,342,226	+				+1.4
3,342,226	+				-1.7
3,342,227	-				-1.8
3,342,227	-				+0.2
3,342,439	+				-0.7
3,342,440	-				-2.2
3,342,440	-				-1.1
3,342,440	-				+0.7
3,342,440	-				-1.4
3,342,440	-				+0.9
3,342,490	-		PP_2939	0.16	-2.1
3,342,553	+		PP_2939	0.41	+0.6
3,342,605	-		PP_2939	0.62	+0.2
3,342,619	+		PP_2939	0.67	-1.2
3,342,671	+		PP_2939	0.87	+1.0
3,342,671	+		PP_2939	0.87	-2.8
3,342,671	+				+0.8
3,342,672	-		PP_2939	0.88	-0.4
3,342,706	+				-2.5
3,342,706	+				+0.1
3,342,706	+				+1.3
3,342,706	+				-0.5
3,342,707	-				+1.3
3,342,707	-				+1.4
3,342,707	-				-0.8