Strain Fitness in Pseudomonas putida KT2440 around PP_2924

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,323,240	+		PP_2923	0.24	+1.5
3,323,243	+		PP_2923	0.24	-0.5
3,323,244	-		PP_2923	0.24	-2.5
3,323,244	-		PP_2923	0.24	-0.5
3,323,244	-		PP_2923	0.24	-1.4
3,323,448	-		PP_2923	0.48	+0.3
3,323,974	+				+0.8
3,323,975	-				-1.5
3,324,041	-		PP_2924	0.13	-3.3
3,324,081	+		PP_2924	0.16	+1.5
3,324,081	+		PP_2924	0.16	-0.4
3,324,081	+		PP_2924	0.16	-0.6
3,324,081	+		PP_2924	0.16	-0.2
3,324,082	-		PP_2924	0.16	-0.2
3,324,082	-		PP_2924	0.16	-0.1
3,324,241	+		PP_2924	0.29	-1.5
3,324,241	+		PP_2924	0.29	-0.3
3,324,242	-		PP_2924	0.29	+0.3
3,324,274	+		PP_2924	0.31	-0.4
3,324,274	+		PP_2924	0.31	-1.3
3,324,355	+		PP_2924	0.38	+1.2
3,324,356	-		PP_2924	0.38	+0.2
3,324,356	-		PP_2924	0.38	+0.2
3,324,356	-		PP_2924	0.38	+1.3
3,324,356	-		PP_2924	0.38	-1.7
3,324,386	-		PP_2924	0.40	-0.1
3,324,413	+		PP_2924	0.42	-2.3
3,324,413	+		PP_2924	0.42	-0.7
3,324,414	-		PP_2924	0.42	-1.4
3,324,414	-		PP_2924	0.42	-1.1
3,324,642	+		PP_2924	0.61	-0.4
3,324,643	-		PP_2924	0.61	+0.1
3,324,685	+		PP_2924	0.64	+1.0
3,324,685	+		PP_2924	0.64	-1.5
3,324,685	+		PP_2924	0.64	+0.5
3,324,686	-		PP_2924	0.64	-0.0
3,324,748	+		PP_2924	0.69	-1.1
3,324,749	-		PP_2924	0.69	-1.2
3,324,925	-		PP_2924	0.83	-1.7
3,324,961	+		PP_2924	0.86	-0.1
3,324,961	+		PP_2924	0.86	-0.1
3,324,961	+		PP_2924	0.86	-1.9
3,324,962	-		PP_2924	0.86	-0.3
3,324,974	+		PP_2924	0.87	-1.3
3,324,975	-		PP_2924	0.87	-0.6
3,324,975	-		PP_2924	0.87	-0.7
3,325,057	+				+0.6
3,325,058	-				-0.2
3,325,247	+				-0.4
3,325,248	-				-1.0
3,325,376	+				-2.8
3,325,377	-				+1.9
3,325,377	-				-0.5
3,325,516	-		PP_2925	0.17	-0.5
3,325,711	-		PP_2925	0.29	-0.3
3,325,753	-		PP_2925	0.31	-0.8
3,325,885	-		PP_2925	0.39	-0.3
3,325,885	-		PP_2925	0.39	+0.7
3,326,100	+		PP_2925	0.53	+0.6
3,326,100	+		PP_2925	0.53	+1.4
3,326,100	+		PP_2925	0.53	+0.0