Strain Fitness in Pseudomonas putida KT2440 around PP_2907

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,305,212	-		PP_2906	0.31	-1.3
3,305,601	+		PP_2906	0.59	-0.5
3,305,603	+		PP_2906	0.59	+0.2
3,305,604	-		PP_2906	0.59	-0.8
3,305,604	-		PP_2906	0.59	-0.3
3,305,696	+		PP_2906	0.66	+0.3
3,305,696	+		PP_2906	0.66	-0.6
3,305,697	-		PP_2906	0.66	-2.1
3,305,757	+		PP_2906	0.70	-0.9
3,305,757	+		PP_2906	0.70	+0.3
3,305,757	+		PP_2906	0.70	-0.0
3,306,044	-				-1.4
3,306,062	-				+0.0
3,306,132	-				-0.1
3,306,132	-				+0.3
3,306,149	+				-0.5
3,306,190	-				+0.6
3,306,360	-		PP_2907	0.31	+3.8
3,306,360	-		PP_2907	0.31	+1.0
3,306,463	+		PP_2907	0.46	+1.4
3,306,484	+		PP_2907	0.49	-0.7
3,306,484	+		PP_2907	0.49	-0.1
3,306,609	+		PP_2907	0.68	-0.3
3,306,846	+				-0.8
3,306,846	+				+0.0
3,306,846	+				+0.7
3,306,847	-				+0.2
3,306,904	+				+0.2
3,307,123	+		PP_2908	0.32	-1.5
3,307,124	-				+2.1
3,307,231	-		PP_2908	0.47	-1.0
3,307,231	-		PP_2908	0.47	-0.6
3,307,231	-		PP_2908	0.47	-0.8
3,307,253	+		PP_2908	0.50	-0.1
3,307,254	-		PP_2908	0.50	+0.8
3,307,254	-		PP_2908	0.50	+0.3
3,307,254	-		PP_2908	0.50	+0.9
3,307,348	+		PP_2908	0.64	-0.4
3,307,349	-		PP_2908	0.64	-1.5
3,307,474	+		PP_2908	0.82	-0.1
3,307,631	-				-1.2
3,307,673	+				+1.4
3,307,673	+				-0.2