Strain Fitness in Pseudomonas putida KT2440 around PP_2887

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,283,918	-		PP_2885	0.75	-1.3
3,284,317	+				+1.5
3,284,318	-				-2.4
3,284,318	-				-0.5
3,284,397	+		PP_2886	0.22	-0.3
3,284,433	+		PP_2886	0.28	+0.7
3,284,433	+		PP_2886	0.28	+0.3
3,284,433	+		PP_2886	0.28	+0.0
3,284,434	-		PP_2886	0.28	-0.1
3,284,434	-		PP_2886	0.28	+0.6
3,284,434	-		PP_2886	0.28	-2.2
3,284,434	-		PP_2886	0.28	-0.1
3,284,435	+		PP_2886	0.29	-2.1
3,284,435	+		PP_2886	0.29	+1.9
3,284,435	+		PP_2886	0.29	-2.6
3,284,435	+		PP_2886	0.29	-1.3
3,284,435	+		PP_2886	0.29	-0.5
3,284,435	+		PP_2886	0.29	+0.4
3,284,435	+		PP_2886	0.29	+1.2
3,284,435	+		PP_2886	0.29	-0.2
3,284,435	+		PP_2886	0.29	+0.8
3,284,436	-		PP_2886	0.29	+0.2
3,284,436	-		PP_2886	0.29	-1.2
3,284,436	-		PP_2886	0.29	-2.7
3,284,436	-		PP_2886	0.29	-0.5
3,284,436	-		PP_2886	0.29	-2.8
3,284,542	-		PP_2886	0.49	-1.4
3,284,870	+				+0.6
3,284,915	-				-0.6
3,284,915	-				-2.5
3,284,915	-				-1.9
3,284,915	-				-1.6
3,284,981	-		PP_2887	0.16	-1.4
3,285,076	+		PP_2887	0.25	-1.5
3,285,076	+		PP_2887	0.25	-0.1
3,285,077	-		PP_2887	0.25	-0.4
3,285,252	+		PP_2887	0.42	-1.1
3,285,252	+		PP_2887	0.42	-2.3
3,285,253	-		PP_2887	0.42	-1.4
3,285,413	+		PP_2887	0.57	-2.4
3,285,413	+		PP_2887	0.57	-0.1
3,285,414	-		PP_2887	0.57	+0.1
3,285,522	+		PP_2887	0.67	-1.9
3,285,523	-		PP_2887	0.68	+1.4
3,285,523	-		PP_2887	0.68	+0.3
3,285,523	-		PP_2887	0.68	-1.4
3,285,645	-		PP_2887	0.79	-1.0
3,285,889	+				+0.3
3,285,956	+				+0.4
3,285,985	-				-0.6
3,286,096	+		PP_2888	0.20	+0.1