Strain Fitness in Pseudomonas putida KT2440 around PP_2835

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,235,604	+		PP_2834	0.45	+0.5
3,235,605	-		PP_2834	0.45	-0.6
3,235,821	-		PP_2834	0.59	-2.2
3,235,851	+		PP_2834	0.61	-0.1
3,235,851	+		PP_2834	0.61	+0.0
3,235,852	-		PP_2834	0.61	-0.5
3,235,949	+		PP_2834	0.68	-0.6
3,236,010	-		PP_2834	0.72	+0.3
3,236,070	+		PP_2834	0.75	-1.9
3,236,070	+		PP_2834	0.75	-0.7
3,236,070	+		PP_2834	0.75	-1.8
3,236,205	+				+2.7
3,236,502	-				+1.9
3,236,519	-				+0.2
3,236,577	+				+0.2
3,236,578	-				+0.8
3,236,595	+				+0.4
3,236,596	-				+2.1
3,236,596	-				-1.6
3,236,652	+		PP_2835	0.14	+0.3
3,236,745	-				+2.7
3,236,759	+		PP_2835	0.24	+0.4
3,236,826	+		PP_2835	0.31	-2.1
3,236,865	-		PP_2835	0.35	-1.6
3,237,391	-		PP_2835	0.85	-1.6
3,237,522	+				-1.4
3,237,700	+		PP_2836	0.11	+0.6
3,237,700	+		PP_2836	0.11	+1.0
3,237,700	+		PP_2836	0.11	-0.2
3,237,935	+		PP_2836	0.31	+0.8
3,237,936	-		PP_2836	0.31	-0.2
3,238,443	+		PP_2836	0.72	+0.8
3,238,443	+		PP_2836	0.72	+0.6