Strain Fitness in Pseudomonas putida KT2440 around PP_2834

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,234,013	+		PP_2833	0.23	+0.7
3,234,013	+		PP_2833	0.23	-1.3
3,234,014	-		PP_2833	0.23	-0.1
3,234,014	-		PP_2833	0.23	-0.2
3,234,140	+		PP_2833	0.36	-0.8
3,234,140	+		PP_2833	0.36	-0.2
3,234,141	-		PP_2833	0.36	-1.3
3,234,183	-		PP_2833	0.41	-0.9
3,234,183	-		PP_2833	0.41	+0.2
3,234,183	-		PP_2833	0.41	+0.2
3,234,369	+		PP_2833	0.60	+0.7
3,234,423	+		PP_2833	0.65	-0.6
3,234,637	+		PP_2833	0.87	+0.9
3,234,637	+		PP_2833	0.87	-0.7
3,234,784	+				+0.3
3,234,853	+				+0.6
3,234,854	-				-1.1
3,234,854	-				+1.4
3,234,854	-				-0.4
3,234,854	-				-1.2
3,234,863	-				-0.2
3,234,871	-				+0.7
3,235,192	-		PP_2834	0.19	-0.5
3,235,284	+		PP_2834	0.25	-1.0
3,235,285	-		PP_2834	0.25	+1.5
3,235,285	-		PP_2834	0.25	-1.6
3,235,604	+		PP_2834	0.45	+0.5
3,235,605	-		PP_2834	0.45	-0.6
3,235,821	-		PP_2834	0.59	-2.2
3,235,851	+		PP_2834	0.61	-0.1
3,235,851	+		PP_2834	0.61	+0.0
3,235,852	-		PP_2834	0.61	-0.5
3,235,949	+		PP_2834	0.68	-0.6
3,236,010	-		PP_2834	0.72	+0.3
3,236,070	+		PP_2834	0.75	-1.9
3,236,070	+		PP_2834	0.75	-0.7
3,236,070	+		PP_2834	0.75	-1.8
3,236,205	+				+2.7
3,236,502	-				+1.9
3,236,519	-				+0.2
3,236,577	+				+0.2
3,236,578	-				+0.8
3,236,595	+				+0.4
3,236,596	-				+2.1
3,236,596	-				-1.6
3,236,652	+		PP_2835	0.14	+0.3
3,236,745	-				+2.7
3,236,759	+		PP_2835	0.24	+0.4
3,236,826	+		PP_2835	0.31	-2.1
3,236,865	-		PP_2835	0.35	-1.6
3,237,391	-		PP_2835	0.85	-1.6