Strain Fitness in Pseudomonas putida KT2440 around PP_2809

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
3,201,066	+		PP_2808	0.29	+0.5
3,201,066	+		PP_2808	0.29	+1.2
3,201,066	+		PP_2808	0.29	-0.8
3,201,067	-		PP_2808	0.29	+0.2
3,201,067	-		PP_2808	0.29	-0.6
3,201,261	+		PP_2808	0.43	+1.4
3,201,262	-		PP_2808	0.43	+0.9
3,201,309	+		PP_2808	0.46	-1.3
3,201,310	-		PP_2808	0.47	-0.3
3,201,414	+		PP_2808	0.54	-1.6
3,201,414	+		PP_2808	0.54	-0.5
3,201,414	+		PP_2808	0.54	+0.5
3,201,415	-		PP_2808	0.54	-0.4
3,201,417	-		PP_2808	0.54	-1.1
3,201,549	+		PP_2808	0.64	-1.4
3,201,550	-		PP_2808	0.64	+1.1
3,201,610	+		PP_2808	0.68	-1.8
3,201,610	+		PP_2808	0.68	+0.3
3,201,610	+		PP_2808	0.68	+0.7
3,201,610	+		PP_2808	0.68	-1.5
3,201,615	+		PP_2808	0.69	-1.8
3,201,616	-		PP_2808	0.69	-1.7
3,201,616	-		PP_2808	0.69	+0.0
3,201,616	-		PP_2808	0.69	+0.0
3,201,616	-		PP_2808	0.69	-1.4
3,201,616	-		PP_2808	0.69	+1.2
3,201,622	-		PP_2808	0.69	-0.4
3,201,660	+		PP_2808	0.72	+0.8
3,201,660	+		PP_2808	0.72	+0.2
3,201,661	-		PP_2808	0.72	-0.7
3,201,739	-		PP_2808	0.78	-1.0
3,201,753	+		PP_2808	0.79	-0.6
3,201,801	+		PP_2808	0.82	-0.4
3,201,802	-		PP_2808	0.83	+0.1
3,201,805	-		PP_2808	0.83	+1.0
3,202,071	-				+0.6
3,202,071	-				-0.2
3,202,111	+				+0.6
3,202,382	+		PP_2809	0.45	-1.1
3,202,488	-		PP_2809	0.60	-1.4
3,202,509	-		PP_2809	0.63	+1.7
3,202,527	-		PP_2809	0.65	-0.6
3,202,532	-		PP_2809	0.66	-0.0
3,202,545	+		PP_2809	0.68	-1.9
3,202,545	+		PP_2809	0.68	-3.1
3,202,545	+		PP_2809	0.68	-2.0
3,202,691	+		PP_2809	0.88	-0.7
3,202,713	-				+0.2
3,203,021	+				+0.3
3,203,427	-		PP_2810	0.12	+1.6
3,203,491	+		PP_2810	0.17	+0.3
3,203,522	+		PP_2810	0.19	+0.6
3,203,522	+		PP_2810	0.19	-1.3
3,203,532	+		PP_2810	0.20	-2.6