Strain Fitness in Pseudomonas putida KT2440 around PP_2607

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,979,838	+		PP_2605	0.74	+0.7
2,979,881	-		PP_2605	0.76	+0.8
2,979,939	+				+4.8
2,980,262	-				+0.8
2,980,478	-		PP_2606	0.47	+0.3
2,980,625	-				-0.3
2,980,625	-				+0.4
2,980,639	+				-0.2
2,980,639	+				+1.1
2,980,640	-				-0.3
2,980,642	+				-1.3
2,980,642	+				-0.4
2,980,642	+				-0.7
2,980,643	-				-1.0
2,980,797	+				+0.2
2,980,797	+				-0.8
2,980,798	-				-0.8
2,980,903	-		PP_2607	0.16	+0.7
2,980,903	-		PP_2607	0.16	+0.7
2,980,945	+		PP_2607	0.18	-0.3
2,980,945	+		PP_2607	0.18	-0.5
2,980,966	-		PP_2607	0.19	+0.2
2,980,966	-		PP_2607	0.19	+0.1
2,980,974	+		PP_2607	0.20	-0.6
2,981,115	+		PP_2607	0.28	-1.3
2,981,115	+		PP_2607	0.28	-1.0
2,981,256	+		PP_2607	0.36	-0.7
2,981,372	+		PP_2607	0.43	-1.8
2,981,373	-		PP_2607	0.43	-0.6
2,981,373	-		PP_2607	0.43	-0.8
2,981,606	+		PP_2607	0.56	-0.5
2,982,189	+		PP_2607	0.90	-0.6
2,982,190	-		PP_2607	0.90	-0.3
2,982,190	-		PP_2607	0.90	+0.8
2,982,459	+		PP_2608	0.11	-1.0
2,982,460	-		PP_2608	0.11	-0.0
2,982,650	+		PP_2608	0.35	-0.7
2,982,685	-		PP_2608	0.39	-2.0
2,982,723	+		PP_2608	0.44	+1.1
2,982,724	-		PP_2608	0.44	-2.4
2,982,754	+		PP_2608	0.48	+0.9
2,982,754	+		PP_2608	0.48	-1.8
2,982,897	+		PP_2608	0.65	+0.7
2,982,898	-		PP_2608	0.65	-0.6
2,982,898	-		PP_2608	0.65	-0.8
2,982,971	-		PP_2608	0.74	-0.5
2,982,971	-		PP_2608	0.74	-0.1
2,982,971	-		PP_2608	0.74	-1.8
2,982,971	-		PP_2608	0.74	+0.5
2,982,971	-		PP_2608	0.74	-0.3
2,983,190	+				-0.3
2,983,191	-				-1.8
2,983,191	-				-1.7
2,983,202	+				+0.5
2,983,203	-				-0.8
2,983,259	-				-1.2