Strain Fitness in Pseudomonas putida KT2440 around PP_2579

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,945,016	+		PP_2577	0.88	-2.4
2,945,016	+		PP_2577	0.88	-2.0
2,945,016	+		PP_2577	0.88	-1.6
2,945,017	-		PP_2577	0.88	+0.6
2,945,121	+				+1.2
2,945,122	-				-0.3
2,945,299	+		PP_2578	0.14	-1.0
2,945,632	-		PP_2578	0.77	+0.0
2,945,739	+				-1.1
2,945,768	+				-1.0
2,945,928	-				+0.1
2,945,928	-				+0.9
2,946,030	+		PP_2579	0.15	+0.3
2,946,031	-		PP_2579	0.15	+1.1
2,946,062	+		PP_2579	0.17	+1.4
2,946,062	+		PP_2579	0.17	-0.7
2,946,063	-		PP_2579	0.17	+0.6
2,946,122	+		PP_2579	0.20	+1.5
2,946,123	-		PP_2579	0.20	-0.5
2,946,123	-		PP_2579	0.20	-1.1
2,946,123	-		PP_2579	0.20	+0.6
2,946,123	-		PP_2579	0.20	+0.4
2,946,149	+		PP_2579	0.22	-0.8
2,946,149	+		PP_2579	0.22	+0.2
2,946,149	+		PP_2579	0.22	+1.1
2,946,150	-		PP_2579	0.22	+0.1
2,946,150	-		PP_2579	0.22	+0.1
2,946,182	+		PP_2579	0.24	+1.5
2,946,209	+		PP_2579	0.25	-0.8
2,946,210	-		PP_2579	0.25	+0.3
2,946,210	-		PP_2579	0.25	-1.1
2,946,210	-		PP_2579	0.25	-1.0
2,946,210	-		PP_2579	0.25	+1.0
2,946,236	+		PP_2579	0.27	+0.6
2,946,236	+		PP_2579	0.27	+0.7
2,946,237	-		PP_2579	0.27	-0.6
2,946,237	-		PP_2579	0.27	-0.4
2,946,245	+		PP_2579	0.27	+1.5
2,946,253	+		PP_2579	0.28	-0.2
2,946,253	+		PP_2579	0.28	-1.2
2,946,254	-		PP_2579	0.28	-0.3
2,946,254	-		PP_2579	0.28	+0.8
2,946,309	-		PP_2579	0.31	-1.0
2,946,332	+		PP_2579	0.32	-0.2
2,946,554	+		PP_2579	0.45	-0.4
2,946,555	-		PP_2579	0.45	+1.5
2,946,749	+		PP_2579	0.56	-1.7
2,946,755	+		PP_2579	0.56	-1.8
2,946,755	+		PP_2579	0.56	-0.4
2,946,755	+		PP_2579	0.56	+0.3
2,946,799	+		PP_2579	0.59	-0.7
2,946,799	+		PP_2579	0.59	+0.5
2,946,800	-		PP_2579	0.59	+0.5
2,946,819	+		PP_2579	0.60	+0.5
2,946,819	+		PP_2579	0.60	+0.5
2,946,819	+		PP_2579	0.60	-1.6
2,946,819	+		PP_2579	0.60	+0.5
2,946,905	+		PP_2579	0.65	-0.7
2,946,938	-		PP_2579	0.67	-1.9
2,947,046	-		PP_2579	0.73	+0.3
2,947,046	-		PP_2579	0.73	+1.5
2,947,128	-		PP_2579	0.78	-0.8
2,947,244	+		PP_2579	0.84	+0.7
2,947,244	+		PP_2579	0.84	-1.7
2,947,244	+		PP_2579	0.84	+1.2
2,947,256	+		PP_2579	0.85	-1.8
2,947,257	-		PP_2579	0.85	+1.2
2,947,442	+				+0.7
2,947,442	+				-1.0
2,947,509	+				-1.8
2,947,510	-				+0.5
2,947,510	-				-1.3
2,947,510	-				-1.3
2,947,510	-				+0.7
2,947,523	+				-0.5
2,947,523	+				+0.3
2,947,523	+				+0.7
2,947,524	-				+1.6
2,947,524	-				-0.3
2,947,524	-				-1.9
2,947,524	-				-0.0
2,947,524	-				-0.4
2,947,584	-				-0.4
2,947,642	-				+0.4
2,947,642	-				-1.3
2,947,650	+				-1.6
2,947,714	-				-0.9
2,947,744	+				+2.0
2,947,744	+				+1.3
2,947,762	-		PP_2580	0.19	+0.3
2,947,762	-		PP_2580	0.19	-0.1
2,947,817	+		PP_2580	0.54	+0.8
2,947,817	+		PP_2580	0.54	-0.2
2,947,927	+				+1.0
2,947,927	+				-1.1
2,947,930	+				+0.2
2,947,930	+				-0.2
2,947,930	+				-1.2
2,947,930	+				-1.3
2,947,931	-				-0.7
2,948,284	-		PP_2581	0.48	-0.6
2,948,388	+		PP_2581	0.78	-0.3
2,948,431	-				+4.8
2,948,506	+				-0.0
2,948,507	-				+1.2