Strain Fitness in Pseudomonas putida KT2440 around PP_2527

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,873,046	+				-0.6
2,873,065	+				-0.6
2,873,066	-				-0.7
2,873,183	+				+1.0
2,873,183	+				+0.4
2,873,183	+				+0.9
2,873,184	-				+0.3
2,873,185	+				-2.3
2,873,186	-				+1.6
2,873,186	-				+0.0
2,873,448	-		PP_2526	0.48	-2.5
2,873,596	+		PP_2526	0.79	-0.6
2,873,596	+		PP_2526	0.79	-1.5
2,873,605	+		PP_2526	0.81	-0.3
2,873,665	+				+0.7
2,873,666	-				-1.4
2,873,666	-				-0.7
2,873,666	-				+1.8
2,873,891	+		PP_2527	0.15	+0.5
2,873,891	+		PP_2527	0.15	+0.7
2,874,086	-		PP_2527	0.41	-1.8
2,874,086	-		PP_2527	0.41	-0.4
2,874,135	+		PP_2527	0.47	+0.1
2,874,209	+		PP_2527	0.57	+0.3
2,874,210	-		PP_2527	0.57	-1.2
2,874,210	-		PP_2527	0.57	+1.7
2,874,251	+		PP_2527	0.62	-0.8
2,874,251	+		PP_2527	0.62	+0.3
2,874,252	-		PP_2527	0.62	+2.1
2,874,252	-		PP_2527	0.62	+1.6
2,874,320	+		PP_2527	0.71	+1.7
2,874,321	-		PP_2527	0.71	-1.1
2,874,321	-		PP_2527	0.71	-1.0
2,874,528	-				-0.9
2,874,797	+		PP_2528	0.15	-1.2
2,874,972	+		PP_2528	0.29	-0.3
2,874,972	+		PP_2528	0.29	-2.5
2,874,973	-		PP_2528	0.29	+0.2
2,874,987	-		PP_2528	0.30	+1.7
2,875,158	+		PP_2528	0.43	+1.1
2,875,269	+		PP_2528	0.52	+1.8
2,875,269	+				+0.1
2,875,408	+		PP_2528	0.63	+0.5
2,875,409	-				+1.9
2,875,442	+		PP_2528	0.65	-1.3
2,875,443	-		PP_2528	0.66	+1.1