Strain Fitness in Pseudomonas putida KT2440 around PP_2409

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,751,675	-		PP_2408	0.39	-0.8
2,751,778	-		PP_2408	0.47	+0.5
2,751,971	+		PP_2408	0.62	-1.0
2,752,005	+		PP_2408	0.65	+0.4
2,752,213	-		PP_2408	0.81	-1.3
2,752,280	+		PP_2408	0.87	-0.4
2,752,281	-		PP_2408	0.87	+0.3
2,752,281	-		PP_2408	0.87	+0.3
2,752,281	-		PP_2408	0.87	+1.2
2,752,300	+		PP_2408	0.88	-1.0
2,752,300	+		PP_2408	0.88	-1.1
2,752,342	-				-0.3
2,752,463	+				-1.4
2,752,464	-				+0.0
2,752,685	+		PP_2409	0.20	+0.8
2,752,685	+		PP_2409	0.20	-1.8
2,752,685	+		PP_2409	0.20	+1.4
2,752,686	-		PP_2409	0.20	-2.4
2,752,686	-		PP_2409	0.20	-0.6
2,752,987	+		PP_2409	0.45	-1.7
2,753,305	+				+1.1
2,753,616	+				+1.4
2,753,803	+				-2.4
2,753,981	-				+1.5
2,754,147	-				+0.5
2,754,147	-		PP_2410	0.15	-1.6
2,754,254	+		PP_2410	0.18	-0.4
2,754,254	+		PP_2410	0.18	-1.0
2,754,255	-		PP_2410	0.18	-0.9
2,754,290	+		PP_2410	0.20	+0.3
2,754,291	-		PP_2410	0.20	-0.7
2,754,356	+		PP_2410	0.22	-1.0
2,754,356	+		PP_2410	0.22	+0.2
2,754,357	-		PP_2410	0.22	+0.7
2,754,357	-		PP_2410	0.22	-0.1
2,754,437	-		PP_2410	0.24	+0.7
2,754,646	-		PP_2410	0.31	-1.0