Strain Fitness in Pseudomonas putida KT2440 around PP_2401

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,744,786	+		PP_2399	0.47	+0.5
2,744,787	-		PP_2399	0.47	-0.1
2,744,810	+		PP_2399	0.50	+1.6
2,744,811	-		PP_2399	0.50	-0.9
2,744,811	-		PP_2399	0.50	+0.5
2,744,904	-		PP_2399	0.64	-0.0
2,745,025	+		PP_2399	0.81	+0.6
2,745,025	+		PP_2399	0.81	-1.2
2,745,026	-		PP_2399	0.81	-0.2
2,745,026	-		PP_2399	0.81	+0.6
2,745,026	-		PP_2399	0.81	+1.1
2,745,277	+		PP_2400	0.17	-1.7
2,745,278	-		PP_2400	0.18	+0.5
2,745,296	-		PP_2400	0.21	-0.7
2,745,325	+		PP_2400	0.27	+0.4
2,745,325	+		PP_2400	0.27	+0.5
2,745,326	-		PP_2400	0.27	+0.4
2,745,326	-		PP_2400	0.27	+1.1
2,745,387	+		PP_2400	0.40	-2.5
2,745,459	+		PP_2400	0.55	-1.9
2,745,459	+		PP_2400	0.55	-1.2
2,745,949	-		PP_2401	0.41	-0.9
2,746,026	+		PP_2401	0.54	+1.2
2,746,026	+		PP_2401	0.54	+0.0
2,746,027	-		PP_2401	0.54	-0.2
2,746,077	+		PP_2401	0.62	+0.9
2,746,077	+		PP_2401	0.62	+0.1
2,746,077	+		PP_2401	0.62	+0.4
2,746,078	-		PP_2401	0.62	+0.9
2,746,175	-		PP_2401	0.78	+0.9
2,746,235	+		PP_2401	0.87	+0.2
2,746,236	-		PP_2401	0.88	+1.8
2,746,236	-		PP_2401	0.88	+1.3
2,746,363	+				+0.4
2,746,364	-				-0.6
2,746,395	+				-0.4
2,746,396	-				-0.9
2,746,396	-				-1.1
2,746,396	-				+0.4
2,746,396	-				-0.7
2,746,396	-				-1.1
2,746,706	+		PP_2402	0.17	+0.1
2,746,706	+				+0.6
2,746,707	-		PP_2402	0.17	+0.7
2,746,707	-		PP_2402	0.17	+1.2
2,746,870	-		PP_2402	0.30	-0.1
2,746,943	-		PP_2402	0.36	+1.9
2,747,274	-		PP_2402	0.62	+3.6
2,747,274	-		PP_2402	0.62	+0.6