Strain Fitness in Pseudomonas putida KT2440 around PP_2370

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,706,167	-		PP_2369	0.79	+0.9
2,706,311	-				+1.2
2,706,328	-		PP_2369	0.83	+0.2
2,706,328	-		PP_2369	0.83	-0.2
2,706,368	+		PP_2369	0.84	+0.4
2,706,368	+		PP_2369	0.84	-1.3
2,706,400	+				+2.2
2,706,400	+		PP_2369	0.85	+0.0
2,706,524	-		PP_2369	0.88	-1.0
2,706,613	-				+0.2
2,706,668	+				-0.8
2,706,668	+				-0.8
2,706,668	+				-0.2
2,706,669	-				-1.0
2,706,825	+				+0.4
2,706,825	+				+1.1
2,706,826	-				+0.1
2,706,930	+				+0.9
2,706,931	-				+0.8
2,706,950	+				-1.3
2,707,125	-				-0.5
2,707,125	-				+0.9
2,707,304	+		PP_2370	0.46	-0.1
2,707,405	+		PP_2370	0.66	+1.6
2,707,405	+		PP_2370	0.66	+2.0
2,707,406	-		PP_2370	0.66	+0.2
2,707,406	-		PP_2370	0.66	-1.2
2,707,476	-		PP_2370	0.80	+0.6
2,707,557	+				+2.3
2,707,572	+				-0.7
2,707,572	+				+0.3
2,707,573	-				+0.5
2,707,604	-				+2.6
2,707,611	+				-0.3
2,707,611	+				+2.0
2,707,611	+				+0.4
2,707,612	-				+1.1
2,707,640	-				-0.4
2,707,768	-		PP_2371	0.13	+0.3
2,707,768	-		PP_2371	0.13	-1.5
2,707,884	+		PP_2371	0.20	-0.3
2,707,885	-		PP_2371	0.20	+1.8
2,707,885	-		PP_2371	0.20	+1.0
2,707,885	-		PP_2371	0.20	-0.2
2,708,118	+		PP_2371	0.34	+1.2
2,708,118	+		PP_2371	0.34	+0.1
2,708,316	+		PP_2371	0.46	+1.3
2,708,470	-		PP_2371	0.55	-1.0
2,708,470	-		PP_2371	0.55	+0.3