Strain Fitness in Pseudomonas putida KT2440 around PP_2337

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,665,932	+		PP_2336	0.69	-0.1
2,665,932	+		PP_2336	0.69	+0.8
2,665,956	+		PP_2336	0.70	+1.1
2,665,956	+		PP_2336	0.70	+1.3
2,665,956	+		PP_2336	0.70	+0.1
2,665,957	-		PP_2336	0.70	+0.9
2,665,957	-		PP_2336	0.70	+0.3
2,665,957	-		PP_2336	0.70	+2.8
2,665,957	-		PP_2336	0.70	+1.4
2,666,316	+				+0.7
2,666,316	+		PP_2336	0.84	+1.0
2,666,316	+		PP_2336	0.84	+1.6
2,666,316	+		PP_2336	0.84	+0.4
2,666,448	-		PP_2336	0.89	+0.8
2,666,545	-				+0.6
2,666,565	-				-0.0
2,666,623	+				+1.5
2,666,667	+				-0.4
2,666,667	+				+1.8
2,666,760	+				-1.3
2,666,761	-				+0.1
2,666,773	+				-0.5
2,666,803	-				-1.0
2,666,803	-				+1.7
2,666,828	+				+1.0
2,666,829	-				+0.8
2,666,829	-				+0.3
2,666,829	-				+1.0
2,667,196	+		PP_2337	0.34	-0.5
2,667,196	+		PP_2337	0.34	+1.7
2,667,416	-		PP_2337	0.52	-0.5
2,667,482	+		PP_2337	0.58	-1.0
2,667,483	-		PP_2337	0.58	+0.8
2,667,580	+		PP_2337	0.66	-1.3
2,667,653	+		PP_2337	0.72	+0.4
2,667,653	+		PP_2337	0.72	+0.3
2,668,053	+				-2.1
2,668,054	-				-1.1
2,668,079	-				+0.2
2,668,162	+				+0.3
2,668,163	-				+2.5
2,668,163	-				+0.5
2,668,163	-				-0.4
2,668,198	+				+0.8
2,668,199	-				-0.8
2,668,199	-				-0.3
2,668,216	-				-1.0
2,668,392	+		PP_2338	0.16	-1.1
2,668,452	+		PP_2338	0.20	+0.7
2,668,779	-		PP_2338	0.42	-1.0
2,668,779	-		PP_2338	0.42	-2.8
2,668,923	+				+4.8
2,668,923	+		PP_2338	0.52	-1.2
2,668,923	+		PP_2338	0.52	+0.3
2,668,923	+		PP_2338	0.52	+0.8
2,668,923	+		PP_2338	0.52	+0.3
2,668,924	-		PP_2338	0.52	+0.5
2,668,924	-		PP_2338	0.52	-1.3
2,668,944	-		PP_2338	0.54	+0.6