Strain Fitness in Pseudomonas putida KT2440 around PP_2310

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,638,292	-		PP_2308	0.50	+0.3
2,638,293	+		PP_2308	0.50	-1.6
2,638,293	+		PP_2308	0.50	-0.7
2,638,294	-		PP_2308	0.50	-0.0
2,638,509	+		PP_2308	0.77	-1.2
2,638,510	-		PP_2308	0.77	-2.0
2,638,510	-		PP_2308	0.77	-0.4
2,638,825	-		PP_2309	0.25	-0.9
2,639,179	+				+0.0
2,639,180	-				-1.6
2,639,181	+				+0.8
2,639,181	+				-1.3
2,639,181	+				-1.3
2,639,181	+				-0.4
2,639,181	+				+1.1
2,639,181	+				-1.5
2,639,181	+				+0.3
2,639,182	-				-0.9
2,639,182	-				+0.6
2,639,182	-				-0.3
2,639,326	-		PP_2310	0.10	-0.1
2,639,455	+		PP_2310	0.19	-0.2
2,639,456	-		PP_2310	0.19	-0.2
2,639,456	-		PP_2310	0.19	-2.3
2,639,599	-		PP_2310	0.28	+0.1
2,639,663	+		PP_2310	0.33	-1.7
2,639,664	-		PP_2310	0.33	-2.5
2,639,664	-		PP_2310	0.33	+0.8
2,639,664	-		PP_2310	0.33	-0.4
2,639,712	+		PP_2310	0.36	-1.0
2,639,788	-		PP_2310	0.41	-1.9
2,639,943	+		PP_2310	0.52	-1.7
2,640,029	-		PP_2310	0.58	-1.2
2,640,088	-		PP_2310	0.62	-0.7
2,640,232	+		PP_2310	0.71	-1.1
2,640,315	+		PP_2310	0.77	+0.2
2,640,316	-		PP_2310	0.77	-0.8
2,640,316	-		PP_2310	0.77	-0.0
2,640,316	-		PP_2310	0.77	-0.1
2,640,316	-		PP_2310	0.77	-0.0
2,640,416	-		PP_2310	0.84	-0.2
2,640,565	+				-0.0
2,640,565	+				+1.0
2,640,623	-				-0.0
2,640,623	-				-0.6
2,640,641	+				-1.9
2,640,641	+				+0.0
2,640,642	-				-0.2
2,640,743	+				-1.3
2,640,822	-				+0.6
2,640,947	-		PP_2311	0.21	-0.1
2,640,968	+		PP_2311	0.23	-1.2
2,640,968	+		PP_2311	0.23	-0.3
2,640,969	-		PP_2311	0.23	-0.2
2,641,073	-		PP_2311	0.36	-1.2
2,641,297	-		PP_2311	0.64	-0.5
2,641,587	-				-2.2