Strain Fitness in Pseudomonas putida KT2440 around PP_2169

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,474,573	+		PP_2168	0.32	-0.0
2,474,573	+		PP_2168	0.32	-0.8
2,474,573	+		PP_2168	0.32	+0.1
2,474,573	+		PP_2168	0.32	-1.5
2,474,574	-		PP_2168	0.32	+0.0
2,474,574	-		PP_2168	0.32	+1.6
2,474,588	+		PP_2168	0.34	+0.4
2,474,588	+		PP_2168	0.34	-1.6
2,474,588	+		PP_2168	0.34	+2.1
2,474,589	-		PP_2168	0.34	+0.2
2,474,589	-		PP_2168	0.34	-0.5
2,474,589	-		PP_2168	0.34	-2.3
2,474,591	+				+2.2
2,474,591	+		PP_2168	0.34	-0.1
2,474,591	+		PP_2168	0.34	+0.9
2,474,597	+		PP_2168	0.35	+0.7
2,474,597	+		PP_2168	0.35	-0.2
2,474,597	+				+2.8
2,474,642	+		PP_2168	0.40	-0.5
2,474,666	+		PP_2168	0.42	-1.3
2,474,675	+		PP_2168	0.43	+0.9
2,474,676	-		PP_2168	0.43	+0.5
2,474,679	+		PP_2168	0.44	+0.9
2,474,679	+		PP_2168	0.44	-1.8
2,474,680	-		PP_2168	0.44	-1.7
2,474,836	+		PP_2168	0.61	-1.4
2,474,836	+		PP_2168	0.61	+1.8
2,474,867	+		PP_2168	0.64	+0.4
2,474,868	-		PP_2168	0.64	-1.9
2,474,946	+		PP_2168	0.72	-0.5
2,474,946	+		PP_2168	0.72	+0.2
2,475,018	+		PP_2168	0.80	+0.5
2,475,045	+		PP_2168	0.83	+0.6
2,475,045	+		PP_2168	0.83	+0.3
2,475,045	+		PP_2168	0.83	-0.2
2,475,046	-		PP_2168	0.83	+1.1
2,475,046	-		PP_2168	0.83	-0.0
2,475,235	+				-1.3
2,475,486	+		PP_2169	0.13	-0.4
2,475,539	+		PP_2169	0.18	-1.6
2,475,539	+		PP_2169	0.18	+0.7
2,475,540	-		PP_2169	0.18	+1.4
2,475,540	-		PP_2169	0.18	-0.2
2,475,540	-		PP_2169	0.18	+1.3
2,475,627	-		PP_2169	0.27	-1.3
2,475,627	-		PP_2169	0.27	+0.3
2,475,627	-		PP_2169	0.27	-0.7
2,475,627	-		PP_2169	0.27	-0.4
2,475,627	-		PP_2169	0.27	+1.2
2,475,638	+		PP_2169	0.28	+3.2
2,475,639	-		PP_2169	0.28	-0.8
2,475,771	-		PP_2169	0.41	+1.1
2,475,900	-		PP_2169	0.54	+0.9
2,475,919	-		PP_2169	0.55	+1.4
2,476,076	+		PP_2169	0.71	+2.0
2,476,229	+		PP_2169	0.86	+0.3
2,476,338	+				+0.7
2,476,338	+				-1.2
2,476,339	-				-0.3
2,476,360	+				+0.9
2,476,384	+				+0.3
2,476,384	+				-0.4
2,476,384	+				+2.0
2,476,384	+				-2.3
2,476,384	+				-0.2
2,476,384	+				+2.1
2,476,384	+				-0.5
2,476,385	-				+1.2
2,476,385	-				+0.8
2,476,385	-				+1.3
2,476,389	-				-1.6
2,476,414	+				-0.3
2,476,431	+				+0.8
2,476,431	+				-0.6
2,476,431	+				-1.1
2,476,431	+				+1.2
2,476,431	+				+1.8
2,476,431	+				-0.9
2,476,432	-				+2.0
2,476,432	-				-0.2
2,476,432	-				-0.2
2,476,432	-				-1.7
2,476,432	-				+0.4
2,476,432	-				-1.5
2,476,432	-				+1.1
2,476,507	+				+2.5
2,476,511	+				+0.7
2,476,511	+				+0.3
2,476,511	+				+0.0
2,476,511	+				-1.1
2,476,511	+				+1.2
2,476,511	+				-0.1
2,476,511	+				-0.8
2,476,512	-				+1.2
2,476,512	-				+0.2
2,476,512	-				+1.1
2,476,512	-				-0.2
2,476,513	+				+0.3
2,476,514	-				+1.1
2,476,548	+		PP_2170	0.12	-0.4
2,476,548	+		PP_2170	0.12	+0.9
2,476,553	+		PP_2170	0.12	-0.1
2,476,696	-		PP_2170	0.33	+0.9
2,476,696	-		PP_2170	0.33	+0.2
2,476,696	-		PP_2170	0.33	-0.2
2,476,740	-		PP_2170	0.39	+0.2
2,476,740	-		PP_2170	0.39	+1.5
2,476,742	-		PP_2170	0.39	-1.1
2,476,753	-		PP_2170	0.41	-0.5
2,476,782	+		PP_2170	0.45	+0.1
2,476,782	+		PP_2170	0.45	-0.2
2,476,783	-		PP_2170	0.45	-1.1
2,476,783	-		PP_2170	0.45	+0.9
2,476,783	-		PP_2170	0.45	+0.2
2,476,783	-		PP_2170	0.45	+0.3
2,476,863	+		PP_2170	0.57	-0.7
2,476,863	+		PP_2170	0.57	+1.4
2,476,864	-		PP_2170	0.57	+0.2
2,477,181	+				+1.0
2,477,181	+				-1.5
2,477,181	+				-0.5
2,477,181	+				-0.4
2,477,182	-				-1.3
2,477,211	+				-0.5
2,477,211	+				+0.6
2,477,211	+				-0.3
2,477,212	-				-0.5
2,477,212	-				-0.1