Strain Fitness in Pseudomonas putida KT2440 around PP_2029

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,305,832	+				+2.0
2,305,833	-		PP_2028	0.58	+0.6
2,305,961	-		PP_2028	0.65	-0.8
2,306,141	+		PP_2028	0.76	+2.5
2,306,141	+		PP_2028	0.76	-0.9
2,306,141	+		PP_2028	0.76	-0.9
2,306,142	-		PP_2028	0.76	+1.0
2,306,413	+				-1.0
2,306,413	+				+0.8
2,306,413	+				-1.5
2,306,414	-				-0.7
2,306,414	-				-0.3
2,306,483	+				-1.8
2,306,484	-				-0.7
2,306,719	+		PP_2029	0.15	+0.3
2,306,828	-		PP_2029	0.26	+1.7
2,306,951	-		PP_2029	0.37	-1.0
2,306,951	-		PP_2029	0.37	+1.5
2,307,193	+				+0.5
2,307,193	+		PP_2029	0.59	+1.4
2,307,704	+		PP_2030	0.17	-0.7
2,307,705	-		PP_2030	0.17	-0.7
2,307,715	+		PP_2030	0.19	-0.3
2,307,715	+		PP_2030	0.19	+2.4
2,307,715	+		PP_2030	0.19	-0.5
2,307,715	+		PP_2030	0.19	-0.4
2,307,715	+		PP_2030	0.19	+0.7
2,307,716	-		PP_2030	0.19	+0.3
2,307,716	-				+0.7
2,307,722	-		PP_2030	0.20	+1.9
2,307,722	-		PP_2030	0.20	+0.7
2,307,887	+		PP_2030	0.54	+0.2