Strain Fitness in Pseudomonas putida KT2440 around PP_1963

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,223,852	+		PP_1962	0.64	+0.4
2,223,879	+		PP_1962	0.65	-0.4
2,224,031	-		PP_1962	0.73	-1.0
2,224,046	-		PP_1962	0.74	+1.4
2,224,339	-		PP_1962	0.89	+2.0
2,224,454	+				+0.4
2,224,876	+		PP_1963	0.12	+1.1
2,224,911	+		PP_1963	0.14	+0.1
2,224,911	+		PP_1963	0.14	+1.7
2,224,912	-		PP_1963	0.14	+0.3
2,225,090	+		PP_1963	0.23	-2.2
2,225,135	+		PP_1963	0.25	-0.9
2,225,243	+		PP_1963	0.31	-0.5
2,225,258	+		PP_1963	0.31	+0.5
2,225,776	+		PP_1963	0.57	+0.5
2,225,828	-		PP_1963	0.60	-0.5
2,226,018	+		PP_1963	0.69	+0.3
2,226,019	-		PP_1963	0.69	-2.2
2,226,263	+		PP_1963	0.82	-1.4
2,226,293	-		PP_1963	0.83	-1.1
2,226,349	-		PP_1963	0.86	-1.7
2,226,373	+		PP_1963	0.87	-1.1
2,226,560	-				+1.5
2,227,443	-				-3.1
2,227,512	+				+3.3
2,227,526	+				-0.9