Strain Fitness in Pseudomonas putida KT2440 around PP_1927

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,173,079	+		PP_1925	0.61	-0.2
2,173,091	+		PP_1925	0.62	-0.4
2,173,092	-		PP_1925	0.62	-0.1
2,173,160	-		PP_1925	0.68	-2.2
2,173,215	+		PP_1925	0.73	+0.7
2,173,238	+		PP_1925	0.75	-1.2
2,173,238	+		PP_1925	0.75	-0.5
2,173,238	+		PP_1925	0.75	+0.5
2,173,238	+		PP_1925	0.75	-1.1
2,173,239	-		PP_1925	0.76	+0.5
2,173,239	-		PP_1925	0.76	-1.1
2,173,250	+		PP_1925	0.77	+0.4
2,173,250	+		PP_1925	0.77	-0.3
2,173,250	+		PP_1925	0.77	+0.7
2,173,251	-		PP_1925	0.77	-0.9
2,173,279	-		PP_1925	0.79	+0.5
2,173,555	-				+0.7
2,173,555	-				+1.1
2,173,555	-				+1.2
2,173,555	-				-1.5
2,173,555	-				-0.3
2,173,555	-				-2.6
2,173,888	+		PP_1926	0.72	+0.6
2,173,888	+		PP_1926	0.72	-2.1
2,173,889	-		PP_1926	0.72	-0.8
2,173,889	-		PP_1926	0.72	-1.5
2,173,922	-		PP_1926	0.79	+1.0
2,173,922	-		PP_1926	0.79	+2.6
2,173,980	-				+1.2
2,174,034	-				+0.6
2,174,043	-				+1.1
2,174,067	+				-0.2
2,174,067	+				-0.7
2,174,098	+				+0.0
2,174,106	+				+0.2
2,174,107	-				-2.1
2,174,107	-				-0.7
2,174,113	+		PP_1927	0.10	-0.4
2,174,114	-		PP_1927	0.11	+0.5
2,174,114	-		PP_1927	0.11	+1.6
2,174,267	+		PP_1927	0.32	-1.9
2,174,267	+		PP_1927	0.32	-2.1
2,174,267	+		PP_1927	0.32	+0.1
2,174,267	+		PP_1927	0.32	-1.7
2,174,268	-		PP_1927	0.32	+0.3
2,174,268	-		PP_1927	0.32	-1.1
2,174,268	-		PP_1927	0.32	-0.3
2,174,268	-		PP_1927	0.32	+0.0
2,174,309	+		PP_1927	0.37	-1.0
2,174,379	+		PP_1927	0.47	+0.1
2,174,380	-		PP_1927	0.47	-0.9
2,174,556	-		PP_1927	0.71	-0.7
2,174,642	-		PP_1927	0.83	-0.7
2,174,642	-		PP_1927	0.83	-0.9
2,174,775	+				-1.7
2,174,776	-				-0.9
2,174,776	-				+1.4
2,174,776	-				-0.6
2,175,249	+				+1.2
2,175,250	-				-0.9
2,175,338	+				+1.3
2,175,338	+				-1.7
2,175,338	+				-0.1
2,175,339	-				-1.4
2,175,339	-				+0.1
2,175,339	-				+1.0
2,175,339	-				-0.3
2,175,341	+				+0.5
2,175,342	-				+0.3
2,175,455	+		PP_1929	0.15	-0.1
2,175,456	-		PP_1929	0.15	+1.6
2,175,456	-		PP_1929	0.15	-1.9
2,175,456	-		PP_1929	0.15	+0.3
2,175,632	+		PP_1929	0.29	-0.4
2,175,662	+		PP_1929	0.31	-1.6
2,175,662	+		PP_1929	0.31	-0.1
2,175,662	+		PP_1929	0.31	+0.3
2,175,663	-		PP_1929	0.31	-1.4
2,175,663	-		PP_1929	0.31	-0.9
2,175,663	-		PP_1929	0.31	-1.0
2,175,674	+		PP_1929	0.32	-0.5
2,175,674	+		PP_1929	0.32	+0.0
2,175,674	+		PP_1929	0.32	+0.1
2,175,674	+		PP_1929	0.32	+1.9
2,175,674	+		PP_1929	0.32	+0.4
2,175,674	+		PP_1929	0.32	-0.9
2,175,674	+		PP_1929	0.32	-0.9
2,175,675	-		PP_1929	0.32	+1.0
2,175,675	-		PP_1929	0.32	-0.2