Strain Fitness in Pseudomonas putida KT2440 around PP_1920

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,163,349	+		PP_5482	0.21	-0.2
2,163,383	-		PP_5482	0.24	+1.5
2,163,422	+		PP_5482	0.28	+1.9
2,163,422	+		PP_5482	0.28	+1.2
2,163,452	+		PP_5482	0.31	-0.2
2,163,610	+		PP_5482	0.46	-0.7
2,163,644	-		PP_5482	0.50	+0.9
2,163,646	-		PP_5482	0.50	-0.7
2,163,786	+		PP_5482	0.64	+1.3
2,163,787	-		PP_5482	0.64	-0.7
2,163,897	+		PP_5482	0.75	-0.5
2,163,980	+		PP_5482	0.83	+0.9
2,163,984	-		PP_5482	0.83	-1.1
2,163,984	-		PP_5482	0.83	+2.0
2,164,147	+				-1.8
2,164,148	-				-0.7
2,164,223	+				-0.5
2,164,364	+				+0.9
2,164,424	+				-0.9
2,164,482	+		PP_1920	0.14	+0.5
2,164,599	-		PP_1920	0.23	-0.7
2,164,632	+		PP_1920	0.26	-2.0
2,164,723	-		PP_1920	0.33	-0.2
2,164,738	+		PP_1920	0.34	+0.2
2,164,738	+		PP_1920	0.34	-2.0
2,164,739	-		PP_1920	0.35	+0.5
2,164,739	-		PP_1920	0.35	-1.9
2,164,739	-		PP_1920	0.35	+0.4
2,164,852	+		PP_1920	0.44	+0.8
2,164,931	+		PP_1920	0.50	-0.8
2,165,143	-		PP_1920	0.68	-0.1
2,165,232	+		PP_1920	0.75	-0.5
2,165,232	-		PP_1920	0.75	-1.8
2,165,266	+		PP_1920	0.78	-2.0
2,165,344	-		PP_1920	0.84	-0.7
2,165,348	+		PP_1920	0.84	+0.3
2,165,351	-		PP_1920	0.85	+1.2
2,165,351	-		PP_1920	0.85	-1.8
2,165,595	-				+0.1
2,165,785	-		PP_5483	0.33	-0.9
2,165,919	+		PP_5483	0.57	-1.6
2,166,133	+				+1.4
2,166,133	+				-1.0
2,166,158	+				-1.3
2,166,158	+				-1.3
2,166,159	-				+0.8
2,166,159	-				-0.5
2,166,182	+				-0.7
2,166,190	+				-0.3
2,166,191	-				-2.2
2,166,250	+				-0.5
2,166,250	+				-0.0
2,166,278	+				+0.1
2,166,278	+				-1.7
2,166,287	+				-0.0
2,166,288	-				-0.1
2,166,295	+				-1.6
2,166,296	-				-2.0
2,166,314	-				-0.0
2,166,319	-				-1.4
2,166,319	-				-0.5
2,166,380	+				+0.5
2,166,406	+				-0.8
2,166,406	+				+0.2
2,166,457	-				-1.0
2,166,490	-				+1.1
2,166,527	+				+1.1
2,166,528	-				-0.9