Strain Fitness in Pseudomonas putida KT2440 around PP_1895

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,136,905	+				+1.1
2,136,905	+				-1.2
2,136,906	-				+0.5
2,136,994	+				-0.0
2,136,994	+				-0.3
2,136,994	+				+1.9
2,136,995	-				+0.4
2,136,995	-				+0.7
2,136,995	-				-0.8
2,137,004	+				+0.0
2,137,082	+				+0.4
2,137,082	+				-0.2
2,137,083	-				-1.0
2,137,105	-				+0.2
2,137,253	+		PP_1894	0.18	-1.0
2,137,253	+		PP_1894	0.18	+0.4
2,137,254	-		PP_1894	0.18	+0.0
2,137,270	+		PP_1894	0.21	-0.5
2,137,556	+		PP_1894	0.67	-1.5
2,137,595	-		PP_1894	0.73	-1.1
2,137,638	+		PP_1894	0.80	-0.9
2,137,639	-		PP_1894	0.80	-1.8
2,137,648	+		PP_1894	0.81	-1.6
2,137,648	+		PP_1894	0.81	-0.1
2,137,648	+		PP_1894	0.81	+1.4
2,137,649	-		PP_1894	0.81	-0.2
2,137,649	-		PP_1894	0.81	-0.7
2,137,649	-		PP_1894	0.81	-0.6
2,137,649	-		PP_1894	0.81	-0.0
2,137,649	-		PP_1894	0.81	-1.1
2,137,649	-		PP_1894	0.81	+0.0
2,137,649	-		PP_1894	0.81	+0.6
2,137,649	-		PP_1894	0.81	-0.5
2,137,687	+		PP_1894	0.88	-1.4
2,137,687	+		PP_1894	0.88	-0.4
2,137,687	+		PP_1894	0.88	+1.3
2,137,687	+		PP_1894	0.88	-0.3
2,137,688	-		PP_1894	0.88	-0.4
2,137,688	-		PP_1894	0.88	-0.9
2,137,688	-		PP_1894	0.88	-0.7
2,137,688	-		PP_1894	0.88	+0.5
2,137,688	-		PP_1894	0.88	+0.5
2,137,688	-		PP_1894	0.88	+0.2
2,137,706	-				-2.4
2,137,717	-				+1.5
2,137,733	-				-0.2
2,137,789	+				-1.6
2,137,801	+				-0.7
2,137,801	+				+0.0
2,137,801	+				+0.3
2,137,802	-				+0.2
2,137,802	-				+0.3
2,137,854	+				-0.5
2,137,855	-				-0.5
2,137,855	-				-0.3
2,137,855	-				+1.4
2,137,886	-				+0.2
2,137,897	+				-0.6
2,137,898	-				-0.5
2,137,898	-				-0.8
2,138,026	+		PP_1895	0.14	+2.8
2,138,213	+		PP_1895	0.34	-1.8
2,138,213	+		PP_1895	0.34	+0.6
2,138,213	+		PP_1895	0.34	-0.1
2,138,214	-		PP_1895	0.34	+1.5
2,138,214	-		PP_1895	0.34	-1.2
2,138,255	+		PP_1895	0.38	+0.6
2,138,510	-		PP_1895	0.66	+0.5
2,138,632	-		PP_1895	0.79	-1.1
2,138,668	+		PP_1895	0.83	+2.1
2,138,826	+				-1.1
2,138,827	-				+1.7
2,138,948	-		PP_1896	0.16	+0.3
2,139,007	+		PP_1896	0.23	-0.2
2,139,007	+		PP_1896	0.23	-0.3
2,139,007	+		PP_1896	0.23	-0.8
2,139,007	+		PP_1896	0.23	-0.2
2,139,008	-		PP_1896	0.23	-0.1
2,139,008	-		PP_1896	0.23	+1.4
2,139,008	-		PP_1896	0.23	-1.3
2,139,008	-		PP_1896	0.23	-0.1
2,139,008	-		PP_1896	0.23	-0.4
2,139,008	-		PP_1896	0.23	+1.3
2,139,008	-		PP_1896	0.23	-1.2
2,139,008	-		PP_1896	0.23	-0.4
2,139,016	+		PP_1896	0.24	-2.2
2,139,016	+		PP_1896	0.24	-0.1
2,139,016	+		PP_1896	0.24	-1.1
2,139,016	+		PP_1896	0.24	-1.8
2,139,016	+		PP_1896	0.24	-0.7
2,139,017	-		PP_1896	0.24	-0.4
2,139,017	-		PP_1896	0.24	-1.5
2,139,017	-		PP_1896	0.24	-0.6
2,139,017	-		PP_1896	0.24	+0.6
2,139,061	+		PP_1896	0.30	-1.5
2,139,061	+		PP_1896	0.30	-0.8
2,139,062	-		PP_1896	0.30	+0.8
2,139,160	+		PP_1896	0.43	+0.8
2,139,160	+		PP_1896	0.43	-0.3
2,139,161	-		PP_1896	0.43	+1.6
2,139,342	+		PP_1896	0.66	+2.1
2,139,382	+		PP_1896	0.71	-0.1
2,139,382	+		PP_1896	0.71	+0.3
2,139,400	+		PP_1896	0.73	+0.3
2,139,491	+				-0.1
2,139,491	+				+0.7
2,139,491	+				-0.2
2,139,492	-				-0.1
2,139,504	+				-2.6
2,139,504	+				-1.7
2,139,556	+				+0.8
2,139,557	-				+2.5
2,139,557	-				+0.1
2,139,557	-				+0.5
2,139,662	+		PP_5481	0.27	+0.3
2,139,662	+		PP_5481	0.27	+0.4
2,139,663	-		PP_5481	0.27	+2.1
2,139,680	+		PP_5481	0.30	+0.3
2,139,680	+		PP_5481	0.30	-0.5
2,139,681	-		PP_5481	0.30	-1.1
2,139,681	-		PP_5481	0.30	+0.4
2,139,830	+		PP_5481	0.54	-1.6
2,139,830	+		PP_5481	0.54	-0.1
2,139,830	+		PP_5481	0.54	+0.7
2,139,830	+		PP_5481	0.54	+1.1