Strain Fitness in Pseudomonas putida KT2440 around PP_1804

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
2,026,259	+				-0.8
2,026,259	+				+0.2
2,026,260	-				-2.6
2,026,260	-				-0.5
2,026,260	-				-0.8
2,026,260	-				-0.1
2,026,260	-				+0.1
2,026,260	-				-2.1
2,026,260	-				-1.1
2,026,266	+				+0.6
2,026,267	-				-2.6
2,026,323	+				+1.3
2,026,323	+				-0.5
2,026,377	+		PP_1803	0.14	-0.9
2,026,448	+		PP_1803	0.21	+0.5
2,026,449	-		PP_1803	0.21	+0.7
2,026,449	-		PP_1803	0.21	-2.0
2,026,472	+				+1.8
2,026,472	+		PP_1803	0.24	-2.1
2,026,472	+		PP_1803	0.24	-1.2
2,026,473	-		PP_1803	0.24	-1.8
2,026,473	-		PP_1803	0.24	-1.7
2,026,473	-		PP_1803	0.24	-1.8
2,026,473	-		PP_1803	0.24	-0.3
2,026,478	+		PP_1803	0.24	-0.5
2,026,478	+		PP_1803	0.24	+0.4
2,026,478	+		PP_1803	0.24	+0.7
2,026,478	+		PP_1803	0.24	-2.4
2,026,478	+		PP_1803	0.24	-1.9
2,026,478	+		PP_1803	0.24	-2.2
2,026,478	+		PP_1803	0.24	-1.5
2,026,478	+				+0.9
2,026,478	+		PP_1803	0.24	-1.4
2,026,478	+		PP_1803	0.24	-1.4
2,026,479	-		PP_1803	0.24	-1.5
2,026,479	-		PP_1803	0.24	-1.5
2,026,479	-		PP_1803	0.24	-1.8
2,026,479	-		PP_1803	0.24	-2.3
2,026,479	-		PP_1803	0.24	-1.6
2,026,479	-		PP_1803	0.24	-0.0
2,026,479	-		PP_1803	0.24	-2.7
2,026,654	-		PP_1803	0.42	-0.8
2,026,676	-		PP_1803	0.45	-0.0
2,026,751	+		PP_1803	0.52	+0.9
2,026,752	-		PP_1803	0.52	-1.5
2,026,769	-		PP_1803	0.54	-2.2
2,026,800	+		PP_1803	0.57	-1.3
2,026,800	+		PP_1803	0.57	-0.2
2,026,800	+		PP_1803	0.57	+1.1
2,026,800	+		PP_1803	0.57	-1.2
2,026,801	-		PP_1803	0.57	+0.6
2,026,801	-		PP_1803	0.57	-0.3
2,026,801	-		PP_1803	0.57	-1.8
2,026,826	+		PP_1803	0.60	-0.6
2,026,826	+		PP_1803	0.60	-0.9
2,026,826	+		PP_1803	0.60	+0.4
2,026,827	-		PP_1803	0.60	-2.0
2,026,827	-		PP_1803	0.60	-1.1
2,026,899	+		PP_1803	0.67	-0.7
2,026,899	+		PP_1803	0.67	-2.2
2,026,979	+		PP_1803	0.76	-2.2
2,026,979	+		PP_1803	0.76	-0.9
2,026,980	-		PP_1803	0.76	-0.5
2,026,980	-		PP_1803	0.76	-1.4
2,026,980	-		PP_1803	0.76	-0.6
2,027,060	+		PP_1803	0.84	-0.1
2,027,061	-		PP_1803	0.84	-2.2
2,027,108	+		PP_1803	0.89	-1.7
2,027,109	-		PP_1803	0.89	-0.4
2,027,109	-		PP_1803	0.89	+0.1
2,027,135	+				-0.2
2,027,135	+				-1.2
2,027,135	+				+1.5
2,027,215	+				-0.8
2,027,216	-				-0.1
2,027,216	-				+0.4
2,027,239	+				+0.7
2,027,239	+				-1.9
2,027,239	+				-2.5
2,027,275	-				-2.7
2,027,315	+		PP_1804	0.10	-0.9
2,027,315	+		PP_1804	0.10	-0.9
2,027,315	+		PP_1804	0.10	-0.7
2,027,325	-		PP_1804	0.11	+0.2
2,027,465	-		PP_1804	0.25	-2.1
2,027,628	+		PP_1804	0.41	-2.8
2,027,628	+		PP_1804	0.41	-2.4
2,027,629	-		PP_1804	0.42	+0.7
2,027,727	+		PP_1804	0.51	-3.2
2,027,728	-		PP_1804	0.51	-1.4
2,027,771	-		PP_1804	0.56	-0.9
2,027,771	-		PP_1804	0.56	-1.1
2,027,771	-		PP_1804	0.56	-1.7
2,027,822	+		PP_1804	0.61	+0.0
2,027,823	-		PP_1804	0.61	+0.8
2,027,823	-		PP_1804	0.61	-0.9
2,027,906	-		PP_1804	0.69	-2.2
2,027,908	+		PP_1804	0.69	-0.4
2,027,909	-		PP_1804	0.69	-0.0
2,027,924	-		PP_1804	0.71	-0.3
2,027,926	+		PP_1804	0.71	-2.5
2,027,926	+		PP_1804	0.71	-0.4
2,027,939	-		PP_1804	0.72	-2.8
2,027,997	+		PP_1804	0.78	-2.0
2,027,998	-		PP_1804	0.78	+0.8
2,028,021	+		PP_1804	0.81	+0.4
2,028,022	-		PP_1804	0.81	-1.0
2,028,022	-		PP_1804	0.81	+0.7
2,028,022	-		PP_1804	0.81	-0.6
2,028,022	-		PP_1804	0.81	-1.1
2,028,027	+		PP_1804	0.81	-1.4
2,028,080	+		PP_1804	0.86	-1.8
2,028,084	-		PP_1804	0.87	-1.6
2,028,084	-		PP_1804	0.87	-0.6
2,028,119	-				+0.8
2,028,162	+				-1.8
2,028,162	+				-1.7
2,028,163	-				-1.7
2,028,176	-				+1.2
2,028,192	+				-1.4
2,028,192	+				-0.1
2,028,193	-				-1.9
2,028,193	-				-1.4
2,028,214	-				-0.5
2,028,214	-				-1.4
2,028,214	-				-1.8
2,028,214	-				-2.2
2,028,214	-				+0.4
2,028,240	+				+1.4
2,028,241	-				+1.7
2,028,241	-				-1.3
2,028,241	-				-2.0
2,028,351	+				+2.7
2,028,352	-				-1.5
2,028,355	+				-0.2
2,028,355	+				+1.2
2,028,355	+				-1.4
2,028,355	+				-3.0
2,028,355	+				-1.0
2,028,355	+				-2.2
2,028,356	-				-0.8
2,028,356	-				-0.7
2,028,356	-				+1.8
2,028,356	-				-2.1
2,028,356	-				-2.3
2,028,359	+				-0.4
2,028,359	+				-0.9
2,028,359	+				-1.4
2,028,359	+				-0.7
2,028,359	+				-1.7
2,028,359	+				-1.7
2,028,360	-				-0.4
2,028,360	-				-1.1
2,028,427	+				-0.8
2,028,441	-				-0.6
2,028,468	+		PP_1805	0.10	-0.5
2,028,469	-		PP_1805	0.10	-2.3
2,028,517	+		PP_1805	0.12	-2.5
2,028,517	+		PP_1805	0.12	-2.1
2,028,549	+		PP_1805	0.14	+0.8
2,028,550	-		PP_1805	0.14	-1.2
2,028,550	-		PP_1805	0.14	-0.4
2,028,596	+		PP_1805	0.16	-1.9
2,028,597	-		PP_1805	0.16	-1.0
2,028,642	+		PP_1805	0.18	+0.7
2,028,642	+		PP_1805	0.18	-1.2
2,028,643	-		PP_1805	0.18	-1.1
2,028,643	-		PP_1805	0.18	-2.1
2,028,643	-		PP_1805	0.18	+0.4
2,028,664	+		PP_1805	0.19	-0.6
2,028,664	+		PP_1805	0.19	-1.1
2,028,693	+		PP_1805	0.21	-0.3
2,028,693	+		PP_1805	0.21	-2.8
2,028,693	+		PP_1805	0.21	-1.4
2,028,693	+		PP_1805	0.21	-0.6
2,028,693	+		PP_1805	0.21	-0.9
2,028,694	-		PP_1805	0.21	-2.4
2,028,727	+		PP_1805	0.23	+0.3
2,028,728	-		PP_1805	0.23	+0.7
2,028,747	+		PP_1805	0.24	-1.5
2,028,784	+		PP_1805	0.25	-0.1
2,028,785	-		PP_1805	0.25	-2.2
2,028,821	-		PP_1805	0.27	-2.1
2,028,828	+		PP_1805	0.27	-1.9
2,028,828	+		PP_1805	0.27	-0.4
2,028,828	+		PP_1805	0.27	-0.3
2,028,829	-		PP_1805	0.27	-2.1
2,028,829	-		PP_1805	0.27	+1.4
2,028,829	-		PP_1805	0.27	-1.0
2,028,829	-		PP_1805	0.27	-1.1
2,028,829	-		PP_1805	0.27	-0.6
2,028,829	-		PP_1805	0.27	-1.0
2,028,829	-		PP_1805	0.27	+0.7
2,028,829	-		PP_1805	0.27	-1.9
2,028,829	-		PP_1805	0.27	+0.5
2,028,954	+		PP_1805	0.34	+1.5
2,028,954	+		PP_1805	0.34	-0.5
2,028,954	+		PP_1805	0.34	+0.2
2,028,955	-		PP_1805	0.34	-0.9
2,028,955	-		PP_1805	0.34	+1.8