Strain Fitness in Pseudomonas putida KT2440 around PP_1764

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,967,250	+				-0.7
1,967,304	+				+1.8
1,967,305	-				+2.5
1,967,310	+				+2.5
1,967,310	+				+1.2
1,967,311	-				-1.0
1,967,311	-				+0.2
1,967,311	-				+0.0
1,967,493	+		PP_1763	0.33	+0.5
1,967,493	+		PP_1763	0.33	-1.0
1,967,494	-		PP_1763	0.33	-0.1
1,967,506	-		PP_1763	0.35	+0.2
1,967,506	-		PP_1763	0.35	+1.8
1,967,506	-		PP_1763	0.35	+2.1
1,967,506	-		PP_1763	0.35	+0.8
1,967,708	+		PP_1763	0.62	+0.4
1,967,708	+				+1.4
1,967,829	+		PP_1763	0.78	+1.3
1,968,113	+				+1.0
1,968,248	+		PP_1764	0.15	+1.7
1,968,248	+		PP_1764	0.15	-0.2
1,968,248	+		PP_1764	0.15	+0.7
1,968,248	+		PP_1764	0.15	-0.2
1,968,248	+		PP_1764	0.15	-0.8
1,968,248	+		PP_1764	0.15	+1.3
1,968,249	-		PP_1764	0.15	-1.0
1,968,250	+		PP_1764	0.15	+0.6
1,968,250	+		PP_1764	0.15	+0.4
1,968,257	-		PP_1764	0.16	-1.1
1,968,801	+				-0.1
1,968,802	-				-0.2
1,968,822	+				-0.6
1,968,822	+				+2.2
1,968,822	+				+0.0
1,968,822	+				+0.2
1,968,822	+				-1.3
1,968,822	+				+0.5
1,968,823	-				-0.2
1,968,823	-				+0.7
1,969,559	-				+0.5
1,969,559	-				+0.2
1,969,559	-				+0.7
1,969,561	-				+0.3
1,969,588	+				+4.4
1,969,589	-				+0.5
1,969,810	-		PP_1766	0.17	+1.1