Strain Fitness in Pseudomonas putida KT2440 around PP_1741

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,940,551	+				+0.9
1,940,551	+		PP_1740	0.54	-1.2
1,940,551	+		PP_1740	0.54	-0.4
1,940,551	+		PP_1740	0.54	+0.5
1,940,552	-		PP_1740	0.54	-1.1
1,940,552	-		PP_1740	0.54	+0.9
1,940,552	-		PP_1740	0.54	-2.3
1,940,552	-		PP_1740	0.54	-0.3
1,940,727	-		PP_1740	0.65	+1.1
1,940,987	+		PP_1740	0.82	+0.1
1,940,988	-		PP_1740	0.82	+0.7
1,940,991	+		PP_1740	0.82	+1.3
1,940,991	+		PP_1740	0.82	+0.5
1,940,991	+		PP_1740	0.82	+1.0
1,940,992	-		PP_1740	0.82	-0.3
1,940,992	-		PP_1740	0.82	+0.1
1,940,992	-		PP_1740	0.82	+1.2
1,940,992	-		PP_1740	0.82	+0.8
1,941,101	+		PP_1740	0.89	-0.6
1,941,102	-		PP_1740	0.89	+0.3
1,941,102	-		PP_1740	0.89	-0.5
1,941,102	-		PP_1740	0.89	+1.1
1,941,211	+				-3.0
1,941,211	+				-0.5
1,941,218	+				+1.2
1,941,218	+				-0.3
1,941,230	-				-0.5
1,941,230	-				+0.6
1,941,240	+				+1.7
1,941,282	+				+0.9
1,941,282	+				+0.5
1,941,286	+				-0.2
1,941,286	+				-0.3
1,941,286	+				+0.6
1,941,286	+				+1.2
1,941,286	+				-2.3
1,941,286	+				+0.8
1,941,286	-				-1.0
1,941,287	-				+1.4
1,941,287	-				-0.4
1,941,287	-				+0.7
1,941,287	-				-0.3
1,941,358	+				-1.5
1,941,358	+				-0.1
1,941,358	+				+1.8
1,941,359	-				+1.1
1,941,372	-				-0.4
1,941,515	-				+0.7
1,941,539	+				-1.4
1,941,539	+				-0.3
1,941,539	+				+0.8
1,941,553	+		PP_1741	0.11	+0.6
1,941,553	+		PP_1741	0.11	-0.4
1,941,553	+		PP_1741	0.11	+1.4
1,941,553	+		PP_1741	0.11	+2.1
1,941,554	-		PP_1741	0.11	-0.9
1,941,564	+		PP_1741	0.12	+0.8
1,941,616	+		PP_1741	0.18	-0.9
1,941,617	-		PP_1741	0.18	+1.0
1,941,617	-		PP_1741	0.18	+2.6
1,941,617	-		PP_1741	0.18	-0.5
1,941,744	+				+1.3
1,941,745	-		PP_1741	0.33	+1.3
1,941,777	+		PP_1741	0.37	+0.1
1,941,825	+		PP_1741	0.42	+0.7
1,941,864	-		PP_1741	0.47	+0.6
1,941,864	-		PP_1741	0.47	+0.2
1,941,864	-		PP_1741	0.47	-1.4
1,941,942	+		PP_1741	0.56	+2.2
1,941,943	-		PP_1741	0.56	+2.0
1,941,958	-		PP_1741	0.58	+0.2
1,942,011	+		PP_1741	0.64	-1.0
1,942,011	+		PP_1741	0.64	-2.0
1,942,012	-		PP_1741	0.64	-0.1
1,942,105	+		PP_1741	0.75	+0.6
1,942,105	+		PP_1741	0.75	+1.1
1,942,105	+		PP_1741	0.75	-0.2
1,942,105	+		PP_1741	0.75	+0.8
1,942,106	-		PP_1741	0.75	-1.0
1,942,106	-		PP_1741	0.75	+1.9
1,942,106	-		PP_1741	0.75	-0.1
1,942,107	+		PP_1741	0.75	-1.3
1,942,108	-		PP_1741	0.75	-1.0
1,942,108	-		PP_1741	0.75	-2.8
1,942,320	+				-0.7
1,942,320	+				+1.3
1,942,320	+				+0.1
1,942,321	-				+0.3
1,942,369	+				-1.6
1,942,383	+				-0.1
1,942,383	+				-0.3
1,942,410	-				+0.4
1,942,437	+				+0.6
1,942,443	+				+0.9
1,942,443	+				-0.6
1,942,443	+				-0.3
1,942,444	-				-1.3
1,942,444	-				+0.8
1,942,444	-				-1.6
1,942,444	-				-0.5
1,942,475	+				+0.7
1,942,475	+				-0.5
1,942,476	-				+0.5
1,942,476	-				+1.7
1,942,480	+				+0.8
1,942,502	+				+0.9
1,942,514	+				+1.2
1,942,542	+				+0.3
1,942,542	+				-0.6
1,942,543	-				+0.1
1,942,552	+				+0.1
1,942,663	-		PP_1742	0.44	-0.6
1,942,710	-		PP_1742	0.59	-0.3
1,942,770	+		PP_1742	0.78	+1.2
1,942,770	+		PP_1742	0.78	+0.9
1,942,771	-				+2.8
1,942,997	+				+0.9
1,942,997	+				-0.9
1,942,997	+				+0.2
1,942,997	+				+1.2
1,942,998	-				-0.5
1,942,998	-				+0.7
1,943,034	-		PP_1743	0.12	-2.2
1,943,034	-		PP_1743	0.12	-0.2
1,943,036	+		PP_1743	0.12	+1.8
1,943,037	-		PP_1743	0.12	-1.5
1,943,037	-		PP_1743	0.12	+0.6
1,943,093	+		PP_1743	0.15	+0.5
1,943,093	+		PP_1743	0.15	+0.7
1,943,094	-		PP_1743	0.16	+0.7
1,943,162	+		PP_1743	0.20	-1.6
1,943,162	+		PP_1743	0.20	+0.1
1,943,237	+		PP_1743	0.24	+0.8
1,943,238	-		PP_1743	0.24	+0.6
1,943,238	-		PP_1743	0.24	-0.6
1,943,238	-		PP_1743	0.24	-0.7