Strain Fitness in Pseudomonas putida KT2440 around PP_1730

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,929,496	+		PP_1728	0.72	-1.5
1,929,497	-		PP_1728	0.72	+1.4
1,929,641	-		PP_1728	0.79	+0.7
1,930,030	-				-0.6
1,930,123	+				-1.7
1,930,123	+				-0.9
1,930,131	+				-1.4
1,930,131	+				-1.0
1,930,131	+				+0.2
1,930,132	-				-0.8
1,930,132	-				+1.0
1,930,177	+		PP_1729	0.23	-1.0
1,930,206	-		PP_1729	0.37	-1.4
1,930,434	+				+1.1
1,930,435	-				-2.4
1,930,435	-				+0.4
1,930,460	+				-1.1
1,930,460	+				+1.6
1,930,460	+				-0.5
1,930,474	+				-1.5
1,930,474	+				-1.0
1,930,475	-				+0.0
1,930,475	-				-0.0
1,930,645	+		PP_1730	0.16	-0.2
1,930,847	+		PP_1730	0.32	-0.9
1,930,848	-		PP_1730	0.32	-2.2
1,931,084	+		PP_1730	0.50	-1.7
1,931,084	+		PP_1730	0.50	-0.4
1,931,085	-		PP_1730	0.50	+1.2
1,931,402	+		PP_1730	0.75	-1.7
1,931,441	-		PP_1730	0.78	-0.2
1,931,570	+		PP_1730	0.88	+1.5
1,931,570	+		PP_1730	0.88	-0.7
1,931,571	-		PP_1730	0.88	-1.4
1,931,571	-		PP_1730	0.88	-2.1
1,931,571	-		PP_1730	0.88	-2.4
1,931,573	+		PP_1730	0.88	+1.4
1,931,574	-		PP_1730	0.88	-1.8
1,931,727	+				-0.2
1,931,728	-				-0.1
1,931,728	-				-1.6
1,931,818	+				-1.0
1,931,818	+				-0.9
1,931,818	+				-0.7
1,931,819	-				-0.0
1,931,864	+				-0.0
1,932,016	+		PP_1731	0.19	-0.2
1,932,134	+		PP_1731	0.37	+1.1
1,932,135	-		PP_1731	0.37	+0.4
1,932,135	-		PP_1731	0.37	+0.1
1,932,205	+		PP_1731	0.48	+0.1
1,932,206	-		PP_1731	0.48	+1.7
1,932,268	+		PP_1731	0.58	+0.9
1,932,268	+		PP_1731	0.58	+1.1
1,932,269	-		PP_1731	0.58	+1.2
1,932,269	-		PP_1731	0.58	+0.6
1,932,551	+				+0.7
1,932,552	-				-0.1
1,932,552	-				+0.2
1,932,552	-				-0.2
1,932,552	-				+0.6
1,932,603	+				-2.4
1,932,612	+				+0.5
1,932,613	-				-1.7
1,932,625	+				-1.5