Strain Fitness in Pseudomonas putida KT2440 around PP_1712

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,911,134	+				+0.8
1,911,134	+				+0.6
1,911,134	+				-1.8
1,911,134	+				-0.6
1,911,135	-				+0.4
1,911,135	-				-0.6
1,911,135	-				-1.2
1,911,135	-				-0.7
1,911,135	-				+0.9
1,911,224	+		PP_1711	0.13	-2.1
1,911,225	-		PP_1711	0.13	-2.3
1,911,225	-		PP_1711	0.13	+0.5
1,911,225	-		PP_1711	0.13	+0.5
1,911,336	+		PP_1711	0.25	-0.5
1,911,336	+		PP_1711	0.25	+0.9
1,911,336	+		PP_1711	0.25	+0.3
1,911,337	-		PP_1711	0.25	-0.3
1,911,337	-		PP_1711	0.25	-0.3
1,911,337	-		PP_1711	0.25	-0.2
1,911,337	-		PP_1711	0.25	+1.2
1,911,337	-		PP_1711	0.25	+1.4
1,911,337	-		PP_1711	0.25	-1.7
1,911,523	-		PP_1711	0.45	+0.4
1,911,632	+		PP_1711	0.56	+0.5
1,911,633	-		PP_1711	0.57	+0.2
1,911,773	+		PP_1711	0.72	-0.9
1,911,774	-		PP_1711	0.72	-0.1
1,911,774	-		PP_1711	0.72	+0.5
1,911,789	-		PP_1711	0.73	+0.1
1,911,789	-		PP_1711	0.73	-0.9
1,911,872	+		PP_1711	0.82	+2.1
1,911,872	+		PP_1711	0.82	-2.1
1,911,872	+		PP_1711	0.82	-0.5
1,911,872	+		PP_1711	0.82	-1.1
1,911,916	-		PP_1711	0.87	+0.2
1,911,916	-		PP_1711	0.87	-0.7
1,912,034	+				+0.6
1,912,035	-				-0.2
1,912,060	+				+0.4
1,912,060	+				+0.7
1,912,063	+				-0.9
1,912,063	+				+0.5
1,912,063	+				+0.1
1,912,064	-				+1.3
1,912,064	-				+1.1
1,912,119	+				-1.0
1,912,119	+				+1.0
1,912,120	-				+0.1
1,912,164	+				+0.8
1,912,184	+				+1.0
1,912,187	-				-0.7
1,912,239	+		PP_1712	0.13	-0.6
1,912,318	-		PP_1712	0.18	-0.0
1,912,340	+		PP_1712	0.20	-1.0
1,912,341	-		PP_1712	0.20	-2.3
1,912,374	+		PP_1712	0.22	-2.3
1,912,414	+		PP_1712	0.25	-1.2
1,912,415	-		PP_1712	0.25	-0.4
1,912,415	-		PP_1712	0.25	+0.3
1,912,415	-		PP_1712	0.25	-2.3
1,912,415	-				+0.5
1,912,463	-		PP_1712	0.28	-1.6
1,912,463	-		PP_1712	0.28	-1.9
1,912,503	+		PP_1712	0.31	-1.5
1,912,517	+		PP_1712	0.32	+1.3
1,912,518	-		PP_1712	0.32	-0.9
1,912,518	-		PP_1712	0.32	-0.5
1,912,518	-		PP_1712	0.32	-1.7
1,912,609	+		PP_1712	0.39	-0.8
1,912,629	+				+1.1
1,912,630	-		PP_1712	0.40	-0.5
1,912,630	-		PP_1712	0.40	-1.2
1,912,630	-		PP_1712	0.40	+0.4
1,912,630	-		PP_1712	0.40	+1.1
1,912,634	-		PP_1712	0.41	+0.1
1,912,634	-		PP_1712	0.41	-0.8
1,912,769	+		PP_1712	0.50	+1.5
1,912,769	+		PP_1712	0.50	-0.9
1,912,770	-		PP_1712	0.50	-1.2
1,912,770	-		PP_1712	0.50	-0.1
1,912,770	-		PP_1712	0.50	-0.7
1,912,770	-		PP_1712	0.50	+1.0
1,912,907	+		PP_1712	0.60	+0.1
1,912,908	-		PP_1712	0.60	+0.8
1,912,909	+		PP_1712	0.60	+0.1
1,912,909	+		PP_1712	0.60	+0.5
1,912,909	+		PP_1712	0.60	-1.5
1,912,909	+		PP_1712	0.60	-0.5
1,912,909	+		PP_1712	0.60	-0.4
1,912,976	+		PP_1712	0.65	-2.2
1,913,031	+		PP_1712	0.69	+0.6
1,913,032	-		PP_1712	0.69	-1.3
1,913,032	-		PP_1712	0.69	+2.1
1,913,151	+		PP_1712	0.77	+1.5
1,913,151	+		PP_1712	0.77	-0.1
1,913,152	-		PP_1712	0.77	+0.6
1,913,152	-		PP_1712	0.77	-1.9
1,913,185	+		PP_1712	0.80	+0.1
1,913,185	+		PP_1712	0.80	-0.3
1,913,186	-		PP_1712	0.80	-0.3
1,913,186	-		PP_1712	0.80	-0.1
1,913,186	-		PP_1712	0.80	+0.9
1,913,284	+		PP_1712	0.87	-2.1
1,913,285	-		PP_1712	0.87	+0.8
1,913,310	+		PP_1712	0.89	-0.1
1,913,385	+				+0.1
1,913,385	+				-0.8
1,913,426	+				+0.6
1,913,426	+				+0.1
1,913,427	-				+1.1
1,913,427	-				+1.9
1,913,496	-				+0.4
1,913,496	-				+0.7
1,913,524	-				-0.4
1,913,569	+				-0.5
1,913,569	+				-0.0
1,913,569	+				-0.8
1,913,569	+				-2.5
1,913,569	+				-2.3
1,913,569	+				-1.1
1,913,570	-				+0.2
1,913,570	-				+2.5
1,913,570	-				-1.7
1,913,570	-				-0.2
1,913,570	-				+0.9
1,913,570	-				-0.6
1,913,570	-				+2.5
1,913,600	-				-1.5
1,913,611	-				+2.0
1,913,659	-				+0.6
1,914,135	+		PP_1713	0.54	-2.9
1,914,135	+		PP_1713	0.54	+0.3
1,914,346	-				+2.4