Strain Fitness in Pseudomonas putida KT2440 around PP_1697

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,890,865	+		PP_1696	0.40	-2.3
1,890,878	-		PP_1696	0.41	+0.1
1,890,878	-		PP_1696	0.41	-0.1
1,890,878	-		PP_1696	0.41	-0.7
1,890,927	-		PP_1696	0.45	+0.6
1,891,156	+		PP_1696	0.64	-1.1
1,891,156	+		PP_1696	0.64	+1.1
1,891,156	+		PP_1696	0.64	+1.2
1,891,157	-		PP_1696	0.64	+0.8
1,891,157	-		PP_1696	0.64	+0.8
1,891,197	+		PP_1696	0.68	-0.8
1,891,332	-		PP_1696	0.79	-0.1
1,891,384	+		PP_1696	0.84	-2.2
1,891,396	-		PP_1696	0.85	+0.5
1,891,483	+				-1.3
1,891,484	-				-0.4
1,891,564	-				-0.5
1,891,617	+				+0.9
1,891,617	+				-0.2
1,891,617	+				-1.2
1,891,617	+				-0.7
1,891,617	+				+0.0
1,891,617	+				-1.5
1,891,618	-				+0.4
1,891,618	-				-1.5
1,891,618	-				-1.2
1,891,727	+				-0.8
1,891,728	-				-0.8
1,891,735	+				-1.0
1,891,735	+				-1.5
1,891,738	-				+0.2
1,892,051	+		PP_1697	0.40	+0.2
1,892,052	-		PP_1697	0.40	+1.1
1,892,276	-		PP_1697	0.71	-1.1
1,892,276	-		PP_1697	0.71	+1.7
1,892,569	+				-0.7
1,892,569	+				+1.2
1,892,569	+				+0.0
1,892,570	-				-0.9
1,892,570	-				-0.5
1,892,577	+				-0.1
1,892,577	+				-0.7
1,892,810	+		PP_1698	0.18	+1.0
1,892,891	+		PP_1698	0.24	+1.2
1,893,008	-		PP_1698	0.33	-1.5
1,893,008	-		PP_1698	0.33	-2.4
1,893,058	+		PP_1698	0.37	+2.8
1,893,058	+		PP_1698	0.37	-0.3
1,893,059	-		PP_1698	0.37	-2.2
1,893,446	-		PP_1698	0.68	-0.5
1,893,446	-		PP_1698	0.68	+0.0
1,893,446	-		PP_1698	0.68	-0.9
1,893,489	+				+0.3
1,893,489	+		PP_1698	0.71	-0.8
1,893,490	-		PP_1698	0.71	-0.3