Strain Fitness in Pseudomonas putida KT2440 around PP_1659

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,853,996	-		PP_1657	0.86	-0.6
1,854,122	+				-0.0
1,854,122	+				+0.6
1,854,123	-				+0.5
1,854,123	-				+0.6
1,854,123	-				-0.3
1,854,123	-				-1.7
1,854,123	-				-1.5
1,854,134	+				-2.2
1,854,135	-				+0.2
1,854,430	+		PP_1658	0.54	+0.3
1,854,430	+		PP_1658	0.54	+0.5
1,854,535	+		PP_1658	0.73	-2.5
1,854,592	-		PP_1658	0.84	-0.5
1,854,592	-		PP_1658	0.84	+0.2
1,854,592	-		PP_1658	0.84	+0.0
1,854,592	-		PP_1658	0.84	-0.2
1,854,640	+				-0.4
1,854,649	+				-1.0
1,854,649	+				-1.7
1,854,649	+				-0.5
1,854,676	+				-0.3
1,854,677	-				-0.5
1,854,677	-				+0.9
1,854,764	+				+0.5
1,854,764	+				-0.2
1,854,764	+				+0.4
1,854,835	-				+0.7
1,854,835	-				-0.7
1,854,902	+				-0.1
1,854,946	+				+0.4
1,854,946	+				+1.5
1,854,969	+				-0.3
1,855,454	+		PP_1659	0.35	+0.2
1,855,454	+		PP_1659	0.35	-0.2
1,855,455	-		PP_1659	0.35	-0.6
1,855,518	-		PP_1659	0.39	-0.7
1,855,689	-		PP_1659	0.52	-1.3
1,855,889	+		PP_1659	0.67	-0.6
1,855,890	-		PP_1659	0.67	+0.0
1,856,060	+		PP_1659	0.80	+0.4
1,856,060	+		PP_1659	0.80	-1.4
1,856,061	-		PP_1659	0.80	-0.0
1,856,061	-		PP_1659	0.80	-0.7
1,856,133	+		PP_1659	0.85	+0.5
1,856,134	-		PP_1659	0.85	+1.0
1,856,138	-		PP_1659	0.86	-1.4
1,856,181	-		PP_1659	0.89	-0.4
1,856,181	-		PP_1659	0.89	-1.4
1,856,181	-		PP_1659	0.89	-1.8
1,856,181	-		PP_1659	0.89	-0.5
1,856,181	-		PP_1659	0.89	-1.3
1,856,502	+		PP_1660	0.39	-1.0
1,856,632	-		PP_1660	0.63	-0.5
1,856,632	-		PP_1660	0.63	-0.9
1,856,661	-		PP_1660	0.69	-0.4
1,856,661	-		PP_1660	0.69	+0.0
1,856,685	+		PP_1660	0.73	-2.0
1,856,685	+		PP_1660	0.73	+0.6
1,856,686	-		PP_1660	0.74	-0.7
1,856,686	-		PP_1660	0.74	+0.9
1,856,686	-		PP_1660	0.74	-0.1
1,856,734	-		PP_1660	0.83	+0.5
1,856,832	+				+0.3
1,856,832	+				-0.9
1,856,832	+				-2.2
1,856,833	-				+0.3
1,856,833	-				+0.5
1,856,903	+				-0.7
1,856,993	+				+1.3
1,857,137	+		PP_1661	0.14	-0.3
1,857,137	+		PP_1661	0.14	-1.6
1,857,138	-		PP_1661	0.14	-1.5
1,857,176	+		PP_1661	0.16	-0.7
1,857,177	-		PP_1661	0.16	-0.5
1,857,263	+		PP_1661	0.20	-0.4
1,857,264	-		PP_1661	0.20	-0.8
1,857,294	-		PP_1661	0.21	-1.7