Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_1560 and PP_1561 overlap by 10 nucleotides PP_1561 and PP_1562 are separated by 127 nucleotides PP_1562 and PP_1563 are separated by 23 nucleotides PP_1563 and PP_1564 are separated by 11 nucleotides PP_1564 and PP_1565 are separated by 31 nucleotides
PP_1560: PP_1560 - conserved protein of unknown function, at 1,755,869 to 1,756,051
_1560
PP_1561: PP_1561 - putative Phage holin, at 1,756,042 to 1,756,410
_1561
PP_1562: PP_1562 - putative Phage terminase, small subunit, at 1,756,538 to 1,756,921
_1562
PP_1563: PP_1563 - putative Phage terminase, large subunit, at 1,756,945 to 1,758,630
_1563
PP_1564: PP_1564 - conserved exported protein of unknown function, at 1,758,642 to 1,758,806
_1564
PP_1565: PP_1565 - Phage portal protein, HK97 family, at 1,758,838 to 1,760,133
_1565
Position (kb)
1756
1757
1758
1759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1755.989 kb on - strand, within PP_1560 at 1756.025 kb on + strand, within PP_1560 at 1756.026 kb on - strand, within PP_1560 at 1756.026 kb on - strand, within PP_1560 at 1756.026 kb on - strand, within PP_1560 at 1756.111 kb on + strand, within PP_1561 at 1756.112 kb on - strand, within PP_1561 at 1756.134 kb on - strand, within PP_1561 at 1756.167 kb on + strand, within PP_1561 at 1756.167 kb on + strand, within PP_1561 at 1756.168 kb on - strand, within PP_1561 at 1756.234 kb on + strand at 1756.234 kb on + strand, within PP_1561 at 1756.234 kb on + strand, within PP_1561 at 1756.701 kb on - strand, within PP_1562 at 1756.701 kb on - strand, within PP_1562 at 1756.919 kb on + strand at 1756.920 kb on - strand at 1756.963 kb on + strand at 1756.964 kb on - strand at 1757.130 kb on + strand, within PP_1563 at 1757.131 kb on - strand, within PP_1563 at 1757.131 kb on - strand, within PP_1563 at 1757.220 kb on + strand, within PP_1563 at 1757.221 kb on - strand, within PP_1563 at 1757.311 kb on + strand, within PP_1563 at 1757.312 kb on - strand, within PP_1563 at 1757.312 kb on - strand, within PP_1563 at 1757.351 kb on - strand, within PP_1563 at 1757.440 kb on + strand, within PP_1563 at 1757.440 kb on + strand, within PP_1563 at 1757.441 kb on - strand, within PP_1563 at 1757.557 kb on + strand, within PP_1563 at 1757.558 kb on - strand, within PP_1563 at 1757.585 kb on - strand, within PP_1563 at 1757.585 kb on - strand, within PP_1563 at 1757.658 kb on + strand, within PP_1563 at 1757.658 kb on + strand, within PP_1563 at 1757.659 kb on - strand, within PP_1563 at 1757.659 kb on - strand, within PP_1563 at 1757.659 kb on - strand, within PP_1563 at 1757.732 kb on + strand, within PP_1563 at 1757.733 kb on - strand, within PP_1563 at 1757.746 kb on + strand, within PP_1563 at 1757.746 kb on + strand, within PP_1563 at 1757.747 kb on - strand, within PP_1563 at 1758.005 kb on - strand, within PP_1563 at 1758.005 kb on - strand, within PP_1563 at 1758.103 kb on + strand, within PP_1563 at 1758.104 kb on - strand, within PP_1563 at 1758.104 kb on - strand, within PP_1563 at 1758.106 kb on + strand, within PP_1563 at 1758.106 kb on + strand, within PP_1563 at 1758.106 kb on + strand, within PP_1563 at 1758.106 kb on + strand, within PP_1563 at 1758.106 kb on + strand at 1758.106 kb on + strand, within PP_1563 at 1758.107 kb on - strand, within PP_1563 at 1758.107 kb on - strand, within PP_1563 at 1758.107 kb on - strand, within PP_1563 at 1758.176 kb on + strand, within PP_1563 at 1758.271 kb on + strand, within PP_1563 at 1758.271 kb on + strand, within PP_1563 at 1758.386 kb on + strand, within PP_1563 at 1758.386 kb on + strand, within PP_1563 at 1758.386 kb on + strand, within PP_1563 at 1758.387 kb on - strand, within PP_1563 at 1758.387 kb on - strand, within PP_1563 at 1758.387 kb on - strand, within PP_1563 at 1758.435 kb on - strand, within PP_1563 at 1758.491 kb on - strand at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.711 kb on + strand, within PP_1564 at 1758.712 kb on - strand, within PP_1564 at 1758.712 kb on - strand, within PP_1564 at 1758.712 kb on - strand, within PP_1564 at 1758.712 kb on - strand, within PP_1564 at 1758.928 kb on + strand at 1758.928 kb on + strand at 1758.928 kb on + strand at 1758.928 kb on + strand at 1758.929 kb on - strand at 1758.929 kb on - strand at 1758.929 kb on - strand at 1758.929 kb on - strand at 1758.929 kb on - strand at 1758.931 kb on + strand at 1758.931 kb on + strand at 1758.932 kb on - strand at 1758.932 kb on - strand at 1759.051 kb on + strand, within PP_1565 at 1759.051 kb on + strand, within PP_1565 at 1759.610 kb on - strand, within PP_1565
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Polymyxin B sulfate 0.002 mg/ml remove 1,755,989 - PP_1560 0.66 -2.4 1,756,025 + PP_1560 0.85 +0.4 1,756,026 - PP_1560 0.86 -0.2 1,756,026 - PP_1560 0.86 -0.6 1,756,026 - PP_1560 0.86 -0.2 1,756,111 + PP_1561 0.19 -0.7 1,756,112 - PP_1561 0.19 -0.1 1,756,134 - PP_1561 0.25 +1.1 1,756,167 + PP_1561 0.34 +0.8 1,756,167 + PP_1561 0.34 -1.0 1,756,168 - PP_1561 0.34 -2.1 1,756,234 + +1.7 1,756,234 + PP_1561 0.52 +1.7 1,756,234 + PP_1561 0.52 -1.3 1,756,701 - PP_1562 0.42 -0.4 1,756,701 - PP_1562 0.42 -1.5 1,756,919 + +0.8 1,756,920 - +0.3 1,756,963 + +1.5 1,756,964 - -0.9 1,757,130 + PP_1563 0.11 +1.4 1,757,131 - PP_1563 0.11 -0.1 1,757,131 - PP_1563 0.11 -1.3 1,757,220 + PP_1563 0.16 -1.8 1,757,221 - PP_1563 0.16 -0.1 1,757,311 + PP_1563 0.22 -0.1 1,757,312 - PP_1563 0.22 -0.6 1,757,312 - PP_1563 0.22 -2.0 1,757,351 - PP_1563 0.24 +1.2 1,757,440 + PP_1563 0.29 -0.2 1,757,440 + PP_1563 0.29 -0.6 1,757,441 - PP_1563 0.29 -2.3 1,757,557 + PP_1563 0.36 -1.5 1,757,558 - PP_1563 0.36 -0.2 1,757,585 - PP_1563 0.38 -1.1 1,757,585 - PP_1563 0.38 +0.8 1,757,658 + PP_1563 0.42 +1.4 1,757,658 + PP_1563 0.42 +0.9 1,757,659 - PP_1563 0.42 +1.1 1,757,659 - PP_1563 0.42 +0.8 1,757,659 - PP_1563 0.42 +2.4 1,757,732 + PP_1563 0.47 -0.1 1,757,733 - PP_1563 0.47 +0.2 1,757,746 + PP_1563 0.48 +1.9 1,757,746 + PP_1563 0.48 -1.0 1,757,747 - PP_1563 0.48 +1.5 1,758,005 - PP_1563 0.63 -0.7 1,758,005 - PP_1563 0.63 +0.0 1,758,103 + PP_1563 0.69 +0.7 1,758,104 - PP_1563 0.69 +1.7 1,758,104 - PP_1563 0.69 -0.0 1,758,106 + PP_1563 0.69 -2.6 1,758,106 + PP_1563 0.69 +1.4 1,758,106 + PP_1563 0.69 +0.4 1,758,106 + PP_1563 0.69 +0.4 1,758,106 + +1.5 1,758,106 + PP_1563 0.69 +1.6 1,758,107 - PP_1563 0.69 -1.2 1,758,107 - PP_1563 0.69 -0.1 1,758,107 - PP_1563 0.69 +0.3 1,758,176 + PP_1563 0.73 +0.3 1,758,271 + PP_1563 0.79 -0.1 1,758,271 + PP_1563 0.79 +1.6 1,758,386 + PP_1563 0.85 +0.4 1,758,386 + PP_1563 0.85 +0.3 1,758,386 + PP_1563 0.85 +1.5 1,758,387 - PP_1563 0.86 +2.2 1,758,387 - PP_1563 0.86 -0.7 1,758,387 - PP_1563 0.86 +0.8 1,758,435 - PP_1563 0.88 +0.0 1,758,491 - -1.6 1,758,711 + PP_1564 0.42 -0.9 1,758,711 + PP_1564 0.42 -0.8 1,758,711 + PP_1564 0.42 +1.6 1,758,711 + PP_1564 0.42 -1.1 1,758,711 + PP_1564 0.42 +0.7 1,758,711 + PP_1564 0.42 -0.7 1,758,711 + PP_1564 0.42 +0.5 1,758,712 - PP_1564 0.42 +0.3 1,758,712 - PP_1564 0.42 -0.4 1,758,712 - PP_1564 0.42 -1.6 1,758,712 - PP_1564 0.42 -1.6 1,758,928 + -0.0 1,758,928 + +0.8 1,758,928 + +0.8 1,758,928 + -0.2 1,758,929 - +1.0 1,758,929 - -1.2 1,758,929 - +1.9 1,758,929 - +1.7 1,758,929 - -2.1 1,758,931 + +1.1 1,758,931 + -0.9 1,758,932 - -0.1 1,758,932 - -0.1 1,759,051 + PP_1565 0.16 -1.2 1,759,051 + PP_1565 0.16 +2.1 1,759,610 - PP_1565 0.60 -1.4
Or see this region's nucleotide sequence