Strain Fitness in Pseudomonas putida KT2440 around PP_1563

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,755,989	-		PP_1560	0.66	-2.4
1,756,025	+		PP_1560	0.85	+0.4
1,756,026	-		PP_1560	0.86	-0.2
1,756,026	-		PP_1560	0.86	-0.6
1,756,026	-		PP_1560	0.86	-0.2
1,756,111	+		PP_1561	0.19	-0.7
1,756,112	-		PP_1561	0.19	-0.1
1,756,134	-		PP_1561	0.25	+1.1
1,756,167	+		PP_1561	0.34	+0.8
1,756,167	+		PP_1561	0.34	-1.0
1,756,168	-		PP_1561	0.34	-2.1
1,756,234	+				+1.7
1,756,234	+		PP_1561	0.52	+1.7
1,756,234	+		PP_1561	0.52	-1.3
1,756,701	-		PP_1562	0.42	-0.4
1,756,701	-		PP_1562	0.42	-1.5
1,756,919	+				+0.8
1,756,920	-				+0.3
1,756,963	+				+1.5
1,756,964	-				-0.9
1,757,130	+		PP_1563	0.11	+1.4
1,757,131	-		PP_1563	0.11	-0.1
1,757,131	-		PP_1563	0.11	-1.3
1,757,220	+		PP_1563	0.16	-1.8
1,757,221	-		PP_1563	0.16	-0.1
1,757,311	+		PP_1563	0.22	-0.1
1,757,312	-		PP_1563	0.22	-0.6
1,757,312	-		PP_1563	0.22	-2.0
1,757,351	-		PP_1563	0.24	+1.2
1,757,440	+		PP_1563	0.29	-0.2
1,757,440	+		PP_1563	0.29	-0.6
1,757,441	-		PP_1563	0.29	-2.3
1,757,557	+		PP_1563	0.36	-1.5
1,757,558	-		PP_1563	0.36	-0.2
1,757,585	-		PP_1563	0.38	-1.1
1,757,585	-		PP_1563	0.38	+0.8
1,757,658	+		PP_1563	0.42	+1.4
1,757,658	+		PP_1563	0.42	+0.9
1,757,659	-		PP_1563	0.42	+1.1
1,757,659	-		PP_1563	0.42	+0.8
1,757,659	-		PP_1563	0.42	+2.4
1,757,732	+		PP_1563	0.47	-0.1
1,757,733	-		PP_1563	0.47	+0.2
1,757,746	+		PP_1563	0.48	+1.9
1,757,746	+		PP_1563	0.48	-1.0
1,757,747	-		PP_1563	0.48	+1.5
1,758,005	-		PP_1563	0.63	-0.7
1,758,005	-		PP_1563	0.63	+0.0
1,758,103	+		PP_1563	0.69	+0.7
1,758,104	-		PP_1563	0.69	+1.7
1,758,104	-		PP_1563	0.69	-0.0
1,758,106	+		PP_1563	0.69	-2.6
1,758,106	+		PP_1563	0.69	+1.4
1,758,106	+		PP_1563	0.69	+0.4
1,758,106	+		PP_1563	0.69	+0.4
1,758,106	+				+1.5
1,758,106	+		PP_1563	0.69	+1.6
1,758,107	-		PP_1563	0.69	-1.2
1,758,107	-		PP_1563	0.69	-0.1
1,758,107	-		PP_1563	0.69	+0.3
1,758,176	+		PP_1563	0.73	+0.3
1,758,271	+		PP_1563	0.79	-0.1
1,758,271	+		PP_1563	0.79	+1.6
1,758,386	+		PP_1563	0.85	+0.4
1,758,386	+		PP_1563	0.85	+0.3
1,758,386	+		PP_1563	0.85	+1.5
1,758,387	-		PP_1563	0.86	+2.2
1,758,387	-		PP_1563	0.86	-0.7
1,758,387	-		PP_1563	0.86	+0.8
1,758,435	-		PP_1563	0.88	+0.0
1,758,491	-				-1.6
1,758,711	+		PP_1564	0.42	-0.9
1,758,711	+		PP_1564	0.42	-0.8
1,758,711	+		PP_1564	0.42	+1.6
1,758,711	+		PP_1564	0.42	-1.1
1,758,711	+		PP_1564	0.42	+0.7
1,758,711	+		PP_1564	0.42	-0.7
1,758,711	+		PP_1564	0.42	+0.5
1,758,712	-		PP_1564	0.42	+0.3
1,758,712	-		PP_1564	0.42	-0.4
1,758,712	-		PP_1564	0.42	-1.6
1,758,712	-		PP_1564	0.42	-1.6
1,758,928	+				-0.0
1,758,928	+				+0.8
1,758,928	+				+0.8
1,758,928	+				-0.2
1,758,929	-				+1.0
1,758,929	-				-1.2
1,758,929	-				+1.9
1,758,929	-				+1.7
1,758,929	-				-2.1
1,758,931	+				+1.1
1,758,931	+				-0.9
1,758,932	-				-0.1
1,758,932	-				-0.1
1,759,051	+		PP_1565	0.16	-1.2
1,759,051	+		PP_1565	0.16	+2.1
1,759,610	-		PP_1565	0.60	-1.4