Strain Fitness in Pseudomonas putida KT2440 around PP_1550

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,749,324	+				+0.6
1,750,247	-				-1.4
1,750,247	-				+0.1
1,750,394	-		PP_1550	0.40	-0.4
1,750,394	-		PP_1550	0.40	+0.5
1,750,394	-		PP_1550	0.40	+1.5
1,750,394	-		PP_1550	0.40	+0.8
1,750,394	-		PP_1550	0.40	-0.3
1,750,394	-		PP_1550	0.40	+1.5
1,750,521	-				+0.4
1,750,521	-				-2.4
1,750,521	-				+0.4
1,750,539	-				-0.9
1,750,539	-				+1.8
1,750,619	-				-1.0
1,750,626	+				-3.4
1,750,627	-				-2.0
1,750,627	-				+2.7
1,750,627	-				-0.0
1,750,756	+		PP_1551	0.13	-1.7
1,750,756	+		PP_1551	0.13	+0.9
1,750,757	-		PP_1551	0.13	+0.5
1,750,948	+		PP_1551	0.36	+0.6
1,750,949	-		PP_1551	0.36	+0.7
1,751,044	+		PP_1551	0.47	+0.9
1,751,049	+		PP_1551	0.48	-0.7
1,751,049	+		PP_1551	0.48	-1.3
1,751,049	+		PP_1551	0.48	+0.3
1,751,065	+		PP_1551	0.49	+0.6
1,751,065	+		PP_1551	0.49	-2.6
1,751,065	+		PP_1551	0.49	+0.6
1,751,066	-		PP_1551	0.50	+0.2
1,751,069	+		PP_1551	0.50	+0.9
1,751,069	+		PP_1551	0.50	+0.3
1,751,069	+		PP_1551	0.50	+0.0
1,751,069	+		PP_1551	0.50	+0.2
1,751,070	-		PP_1551	0.50	+1.4
1,751,091	+		PP_1551	0.53	+0.4
1,751,091	+		PP_1551	0.53	-1.4
1,751,091	+		PP_1551	0.53	-1.3
1,751,091	+		PP_1551	0.53	-0.7
1,751,092	-		PP_1551	0.53	+1.2
1,751,092	-		PP_1551	0.53	+1.6
1,751,092	-		PP_1551	0.53	+0.6
1,751,092	-		PP_1551	0.53	-0.4
1,751,092	-		PP_1551	0.53	+1.0
1,751,092	-		PP_1551	0.53	+1.8
1,751,212	+		PP_1551	0.67	+0.2
1,751,486	-				+0.3