Strain Fitness in Pseudomonas putida KT2440 around PP_1542

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,743,315	+				-0.5
1,743,727	+		PP_1541	0.47	+0.5
1,743,728	-		PP_1541	0.47	+0.2
1,743,793	+		PP_1541	0.55	+3.4
1,743,793	+		PP_1541	0.55	-1.1
1,743,794	-		PP_1541	0.55	-1.6
1,743,794	-		PP_1541	0.55	+1.2
1,743,819	+		PP_1541	0.57	-1.2
1,743,819	+		PP_1541	0.57	+0.4
1,743,819	+		PP_1541	0.57	+0.8
1,743,820	-		PP_1541	0.57	-1.5
1,743,820	-		PP_1541	0.57	+0.9
1,744,034	-		PP_1541	0.81	-1.0
1,744,034	-				+1.4
1,744,075	+		PP_1541	0.85	+0.7
1,744,075	+		PP_1541	0.85	-0.5
1,744,075	+		PP_1541	0.85	+0.3
1,744,075	+		PP_1541	0.85	+0.9
1,744,076	-		PP_1541	0.85	-0.1
1,744,122	+				-0.7
1,744,181	-				-0.5
1,744,198	+				-0.8
1,744,198	+				-0.8
1,744,199	-				+0.1
1,744,199	-				-2.0
1,744,199	-				-1.0
1,744,201	+				-2.6
1,744,201	+				-2.3
1,744,201	+				-0.0
1,744,202	-				-0.2
1,744,202	-				+1.7
1,744,212	-				+0.3
1,744,246	-				+0.1
1,744,246	-				+0.7
1,744,342	+		PP_1542	0.11	+1.8
1,744,343	-		PP_1542	0.11	+0.2
1,744,362	+		PP_1542	0.14	+0.9
1,744,486	+		PP_1542	0.35	+1.1
1,744,486	+		PP_1542	0.35	-0.4
1,744,486	+		PP_1542	0.35	+0.2
1,744,486	+		PP_1542	0.35	-0.6
1,744,486	+		PP_1542	0.35	-1.0
1,744,486	+		PP_1542	0.35	+0.7
1,744,555	+		PP_1542	0.46	-0.9
1,744,556	-		PP_1542	0.47	+1.4
1,744,576	+		PP_1542	0.50	+1.0
1,744,731	+		PP_1542	0.76	+0.9
1,744,732	-		PP_1542	0.76	-1.3
1,744,732	-		PP_1542	0.76	+1.2
1,744,732	-		PP_1542	0.76	-0.3
1,744,732	-		PP_1542	0.76	+1.3
1,744,757	-		PP_1542	0.80	+1.2
1,744,757	-		PP_1542	0.80	+1.0
1,744,942	+				-0.4
1,744,942	+				-0.4
1,744,942	+				+0.5
1,744,943	-				-1.0
1,744,945	+				+0.7
1,745,035	+				+1.4
1,745,035	+				+0.3
1,745,036	-				-0.4
1,745,036	-				+0.1
1,745,036	-				+1.1
1,745,036	-				+0.6
1,745,036	-				-0.7
1,745,036	-				-2.5
1,745,039	+				+1.4
1,745,039	+				-0.5
1,745,093	+				+0.6
1,745,131	+				+0.1
1,745,279	+		PP_1543	0.12	-1.1
1,745,280	-		PP_1543	0.12	-0.2
1,745,341	+		PP_1543	0.23	-0.2
1,745,555	+		PP_1543	0.62	+1.2
1,745,555	+		PP_1543	0.62	-1.1
1,745,556	-		PP_1543	0.62	+1.1
1,745,556	-		PP_1543	0.62	+1.1
1,745,556	-		PP_1543	0.62	-1.1
1,745,556	-		PP_1543	0.62	-0.6
1,745,556	-		PP_1543	0.62	+1.3
1,745,607	+		PP_1543	0.72	-0.4
1,745,607	+		PP_1543	0.72	+0.5
1,745,608	-		PP_1543	0.72	+0.8
1,745,619	-		PP_1543	0.74	+0.1
1,745,619	-		PP_1543	0.74	+0.1
1,745,766	+				+0.1
1,745,767	-				+1.4
1,745,855	+				+0.1
1,745,856	-				-0.2
1,745,869	+				+0.3