Strain Fitness in Pseudomonas putida KT2440 around PP_1527

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,732,995	+		PP_1526	0.66	+0.3
1,732,995	+		PP_1526	0.66	+0.0
1,732,996	-		PP_1526	0.66	-1.8
1,733,053	-		PP_1526	0.68	-0.1
1,733,053	-		PP_1526	0.68	-0.6
1,733,070	+		PP_1526	0.69	-0.3
1,733,070	+		PP_1526	0.69	-0.2
1,733,071	-		PP_1526	0.69	-1.7
1,733,115	+		PP_1526	0.71	-1.1
1,733,115	+		PP_1526	0.71	-0.5
1,733,116	-		PP_1526	0.71	+0.1
1,733,116	-		PP_1526	0.71	+0.7
1,733,116	-		PP_1526	0.71	-0.3
1,733,406	+		PP_1526	0.82	-0.9
1,733,406	+		PP_1526	0.82	+1.5
1,733,407	-		PP_1526	0.82	+0.2
1,733,553	-		PP_1526	0.88	-0.6
1,733,624	-				+0.6
1,733,624	-				+1.7
1,733,625	+				-1.6
1,733,625	+				+1.2
1,733,626	-				-0.0
1,733,629	+				-1.4
1,733,629	+				-1.0
1,733,629	+				-0.3
1,733,629	+				-0.7
1,733,629	+				-1.0
1,733,629	+				+0.1
1,733,629	+				-0.4
1,733,630	-				-0.3
1,733,630	-				+1.3
1,733,736	+				+0.3
1,733,838	-				-0.0
1,733,895	-				-0.1
1,733,903	-				-0.7
1,733,903	-				-1.0
1,733,957	+				-0.8
1,733,957	+				-1.8
1,733,957	+				-0.1
1,733,957	+				-0.1
1,733,958	-				+0.9
1,733,958	-				-0.5
1,733,958	-				+1.2
1,733,959	+				-1.5
1,733,959	+				-0.3
1,733,959	+				+0.1
1,733,959	+				-0.6
1,733,960	-				-2.3
1,733,960	-				-0.7
1,733,960	-				-0.6
1,733,983	-				-1.3
1,734,031	+				+2.0
1,734,084	+		PP_1527	0.12	+0.1
1,734,177	+		PP_1527	0.24	+1.0
1,734,177	+		PP_1527	0.24	+2.2
1,734,178	-		PP_1527	0.24	+0.0
1,734,322	+		PP_1527	0.42	+1.4
1,734,322	+		PP_1527	0.42	-1.2
1,734,323	-		PP_1527	0.42	+0.8
1,734,426	+		PP_1527	0.54	+0.5
1,734,538	+		PP_1527	0.68	+1.4
1,734,568	+		PP_1527	0.72	+1.1
1,734,568	+		PP_1527	0.72	+0.0
1,734,568	+		PP_1527	0.72	+0.0
1,734,568	+		PP_1527	0.72	-1.1
1,734,568	+		PP_1527	0.72	-0.7
1,734,569	-		PP_1527	0.72	+0.2
1,734,743	+				-1.0
1,734,796	+				+0.7
1,734,797	-				+0.7
1,734,840	+				-0.8
1,734,840	+				+0.4
1,734,840	+				-1.0
1,734,840	+				-0.6
1,734,841	-				-0.3
1,734,841	-				-0.1
1,734,868	+				-2.1
1,734,869	-				-0.5
1,735,006	+		PP_1528	0.23	-1.2
1,735,158	-		PP_1528	0.60	+0.3
1,735,385	+				-0.7
1,735,474	+		PP_1529	0.13	+1.8
1,735,500	+		PP_1529	0.15	+0.9
1,735,658	+		PP_1529	0.28	+0.9
1,735,658	+		PP_1529	0.28	+1.5
1,735,659	-		PP_1529	0.28	-1.4
1,735,659	-		PP_1529	0.28	-0.1