Strain Fitness in Pseudomonas putida KT2440 around PP_1516

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,719,262	+				-0.9
1,719,263	-				-1.4
1,719,271	+				-0.2
1,719,271	+				-0.7
1,719,272	-				+0.3
1,719,272	-				+1.6
1,719,292	+				-0.8
1,719,293	-				+0.2
1,719,293	-				-0.8
1,719,354	+				-0.5
1,719,355	-				+0.1
1,719,355	-				-1.4
1,719,387	+				+1.0
1,719,388	-				+1.1
1,719,388	-				+0.6
1,719,399	+				-0.4
1,719,399	+				-0.8
1,719,399	+				-1.6
1,719,399	+				-1.4
1,719,564	+		PP_1515	0.30	+2.7
1,719,607	+		PP_1515	0.37	-1.6
1,719,608	-		PP_1515	0.37	-1.2
1,719,614	-		PP_1515	0.38	-0.7
1,719,614	-		PP_1515	0.38	-1.4
1,719,690	-		PP_1515	0.50	-1.3
1,719,690	-		PP_1515	0.50	-2.0
1,719,690	-		PP_1515	0.50	-2.1
1,719,751	+		PP_1515	0.60	-1.0
1,719,838	+		PP_1515	0.73	+0.7
1,720,062	-				-0.1
1,720,073	-				-0.6
1,720,209	-				+0.3
1,720,214	-				-0.9
1,720,230	-				+0.6
1,720,232	+				-1.1
1,720,232	+				+0.1
1,720,405	+		PP_1516	0.13	+0.1
1,720,624	+		PP_1516	0.33	-0.8
1,720,666	+		PP_1516	0.37	+0.1
1,720,667	-		PP_1516	0.37	-0.6
1,720,733	-		PP_1516	0.43	-1.6
1,720,757	-		PP_1516	0.45	-0.7
1,720,763	+		PP_1516	0.46	-0.6
1,721,215	+		PP_1516	0.87	-0.6
1,721,216	-		PP_1516	0.87	-1.3
1,721,288	+				+0.6
1,721,310	-				+0.8
1,721,336	+				-0.2
1,721,337	-				+0.7
1,721,337	-				-0.7
1,721,359	+				+1.0
1,721,603	-				-0.7
1,721,796	+		PP_1517	0.14	+1.2
1,721,796	+		PP_1517	0.14	-0.4
1,721,796	+		PP_1517	0.14	-0.2
1,721,796	+		PP_1517	0.14	-1.3
1,721,796	+		PP_1517	0.14	+0.9
1,721,797	-		PP_1517	0.14	+2.0
1,721,800	+		PP_1517	0.14	+0.4
1,721,800	+		PP_1517	0.14	-1.8
1,721,800	+		PP_1517	0.14	+0.4
1,721,800	+		PP_1517	0.14	+0.2
1,721,800	+		PP_1517	0.14	-0.9
1,721,800	+		PP_1517	0.14	+0.2
1,721,827	+		PP_1517	0.15	+1.0
1,721,845	+		PP_1517	0.16	-0.8
1,721,846	-		PP_1517	0.16	+1.6
1,721,857	-		PP_1517	0.16	+1.2
1,722,300	+		PP_1517	0.30	-0.1
1,722,300	+		PP_1517	0.30	+0.6
1,722,300	+		PP_1517	0.30	+0.5
1,722,301	-		PP_1517	0.30	+1.9
1,722,301	-		PP_1517	0.30	+1.8