Strain Fitness in Pseudomonas putida KT2440 around PP_1513

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,716,320	+		PP_1511	0.63	+0.1
1,716,512	+				-1.8
1,717,023	-		PP_1512	0.72	+0.3
1,717,023	-		PP_1512	0.72	-0.3
1,717,023	-		PP_1512	0.72	-0.7
1,717,091	-		PP_1512	0.83	-0.3
1,717,145	+				-1.4
1,717,146	-				-1.4
1,717,166	+				-0.8
1,717,166	+				-0.6
1,717,167	-				+0.2
1,717,167	-				-2.2
1,717,167	-				-0.9
1,717,188	+				+0.9
1,717,189	-				-1.7
1,717,189	-				+0.3
1,717,189	-				+0.7
1,717,270	-				-0.3
1,717,351	-				-1.9
1,717,351	-				-2.0
1,717,594	+		PP_1513	0.38	-0.1
1,717,825	-		PP_1513	0.67	-2.8
1,717,825	-		PP_1513	0.67	-1.0
1,718,019	-				+0.0
1,718,031	-				+0.0
1,718,044	-				-2.1
1,718,052	+				-0.4
1,718,052	+				-2.2
1,718,053	-				+0.3
1,718,087	+				-0.3
1,718,088	-				+0.3
1,718,110	+				-0.3
1,718,110	+				+0.1
1,718,110	+				+2.8
1,718,111	-				-1.7
1,718,111	-				-0.3
1,718,111	-				+0.7
1,718,111	-				+1.1
1,718,176	+				-0.5
1,718,188	+				+0.6
1,718,188	+				-1.0
1,718,189	-				-0.3
1,718,189	-				-1.2
1,718,202	-				+0.4
1,718,202	-				-0.1
1,718,214	-				-1.4
1,718,214	-				-0.2
1,718,220	+				+0.6
1,718,220	+				-0.4
1,718,255	-				+0.4
1,718,255	-				+0.4
1,718,270	-				+0.0
1,718,292	+				+0.2
1,718,292	+				-0.8
1,718,339	-				+0.6
1,718,339	-				+0.1
1,718,339	-				+0.5
1,718,479	-		PP_1514	0.21	+0.0
1,718,508	+		PP_1514	0.24	+0.1
1,718,508	+		PP_1514	0.24	+0.9
1,718,509	-		PP_1514	0.25	-1.3
1,718,509	-		PP_1514	0.25	-1.1
1,718,598	+		PP_1514	0.34	+0.9
1,718,598	+		PP_1514	0.34	+0.2
1,718,599	-		PP_1514	0.34	+0.3
1,718,599	-		PP_1514	0.34	+1.3
1,718,616	+		PP_1514	0.36	+0.4
1,718,617	-		PP_1514	0.36	+0.3
1,718,617	-		PP_1514	0.36	+0.0
1,718,697	+		PP_1514	0.44	-0.2
1,718,698	-				+2.0
1,718,698	-		PP_1514	0.44	+0.9
1,718,698	-		PP_1514	0.44	+1.1
1,718,698	-		PP_1514	0.44	-1.2
1,718,703	+		PP_1514	0.45	-0.4
1,718,703	+		PP_1514	0.45	-0.4
1,718,756	+		PP_1514	0.50	-1.2
1,718,809	+		PP_1514	0.56	-1.7
1,718,820	-		PP_1514	0.57	+2.9
1,718,820	-		PP_1514	0.57	-0.9
1,718,828	-		PP_1514	0.57	-0.6
1,718,870	+		PP_1514	0.62	-0.0
1,718,871	-		PP_1514	0.62	-0.2
1,718,876	-		PP_1514	0.62	-0.5
1,718,885	+		PP_1514	0.63	+0.4
1,718,885	+		PP_1514	0.63	-1.0
1,718,923	+		PP_1514	0.67	+0.8
1,718,924	-		PP_1514	0.67	-2.7
1,718,972	+		PP_1514	0.72	-1.3