Strain Fitness in Pseudomonas putida KT2440 around PP_1467

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,670,750	-		PP_1466	0.19	-1.1
1,670,942	-		PP_1466	0.66	+0.7
1,670,942	-		PP_1466	0.66	+0.5
1,670,984	+		PP_1466	0.76	-0.8
1,670,985	-		PP_1466	0.77	-0.1
1,670,985	-		PP_1466	0.77	-0.5
1,671,081	+				-0.4
1,671,082	-				-1.4
1,671,148	+				+0.4
1,671,161	+				-0.4
1,671,162	-				+0.3
1,671,162	-				+1.1
1,671,162	-				+0.7
1,671,228	+				-0.3
1,671,228	+				+0.4
1,671,228	+				+0.6
1,671,265	+		PP_1467	0.10	-0.3
1,671,265	+		PP_1467	0.10	+1.4
1,671,265	+		PP_1467	0.10	-1.1
1,671,265	+		PP_1467	0.10	-1.4
1,671,266	-		PP_1467	0.10	+0.2
1,671,267	+		PP_1467	0.10	+0.7
1,671,268	-		PP_1467	0.10	-0.1
1,671,310	-		PP_1467	0.13	-0.9
1,671,310	-		PP_1467	0.13	+0.7
1,671,310	-		PP_1467	0.13	-1.7
1,671,332	+		PP_1467	0.14	-1.0
1,671,332	+		PP_1467	0.14	-0.5
1,671,333	-		PP_1467	0.14	-1.5
1,671,373	+		PP_1467	0.16	-0.9
1,671,373	+		PP_1467	0.16	+1.3
1,671,373	+		PP_1467	0.16	+1.7
1,671,458	+		PP_1467	0.21	+1.9
1,671,549	+		PP_1467	0.26	+0.2
1,672,001	+		PP_1467	0.51	+1.7
1,672,002	-		PP_1467	0.51	-0.4
1,672,191	-		PP_1467	0.61	+0.1
1,672,230	+		PP_1467	0.64	+1.5
1,672,230	+		PP_1467	0.64	+0.8
1,672,231	-		PP_1467	0.64	-1.8
1,672,231	-		PP_1467	0.64	+0.9
1,672,348	+		PP_1467	0.70	+0.4
1,672,377	+		PP_1467	0.72	-0.2
1,672,900	-				-0.2
1,672,900	-				-0.4
1,672,900	-				-2.0
1,672,914	-				-0.1
1,672,923	+				+0.6
1,672,924	-				-0.5
1,672,924	-				-2.3
1,672,924	-				-0.0
1,673,003	+				-2.4
1,673,158	+		PP_1468	0.22	+0.3
1,673,387	-		PP_1468	0.48	-1.9
1,673,533	+		PP_1468	0.64	-0.3
1,673,637	+		PP_1468	0.76	-0.8
1,673,791	+				+0.5
1,673,791	+				-0.7
1,673,791	+				-1.2
1,673,791	+				-0.3
1,673,791	+				+0.8
1,673,791	+				-0.1
1,673,792	-				-2.4
1,673,792	-				-0.6
1,673,794	-				-1.7