Strain Fitness in Pseudomonas putida KT2440 around PP_1415

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,613,743	+		PP_1414	0.49	-0.4
1,613,743	+		PP_1414	0.49	+0.6
1,613,743	+		PP_1414	0.49	-1.3
1,613,743	+		PP_1414	0.49	-0.2
1,613,744	-		PP_1414	0.49	-1.7
1,613,744	-		PP_1414	0.49	+1.9
1,613,778	+		PP_1414	0.51	-0.2
1,613,778	+		PP_1414	0.51	-1.2
1,613,779	-		PP_1414	0.51	-0.7
1,613,823	+		PP_1414	0.53	-0.9
1,613,823	+		PP_1414	0.53	+0.9
1,613,824	-		PP_1414	0.54	-0.9
1,613,824	-		PP_1414	0.54	-0.1
1,613,824	-		PP_1414	0.54	+0.8
1,613,824	-		PP_1414	0.54	-1.2
1,613,824	-		PP_1414	0.54	+1.1
1,613,824	-		PP_1414	0.54	-0.6
1,614,028	-		PP_1414	0.66	-2.5
1,614,043	-		PP_1414	0.67	+0.3
1,614,043	-		PP_1414	0.67	+0.8
1,614,043	-		PP_1414	0.67	-0.5
1,614,059	-		PP_1414	0.67	+0.2
1,614,084	-		PP_1414	0.69	-0.6
1,614,108	+		PP_1414	0.70	-2.3
1,614,109	-		PP_1414	0.70	+0.2
1,614,109	-		PP_1414	0.70	+0.2
1,614,112	+		PP_1414	0.71	+0.0
1,614,112	+		PP_1414	0.71	-0.2
1,614,112	+		PP_1414	0.71	-0.5
1,614,112	+		PP_1414	0.71	+0.4
1,614,113	-		PP_1414	0.71	+0.9
1,614,113	-		PP_1414	0.71	-0.9
1,614,113	-		PP_1414	0.71	+0.0
1,614,113	-		PP_1414	0.71	+1.5
1,614,113	-		PP_1414	0.71	+0.4
1,614,134	-		PP_1414	0.72	+0.6
1,614,445	+				+0.3
1,614,469	+				+1.0
1,614,569	+				+0.3
1,614,570	-				-0.8
1,614,570	-				+1.6
1,614,580	+				+1.6
1,614,580	+				-2.1
1,614,581	-				+0.7
1,614,609	+				-0.4
1,614,668	-				+0.6
1,614,668	-				-1.3
1,614,668	-				-1.6
1,614,668	-				-0.8
1,614,693	+				-0.8
1,614,693	+				+1.1
1,614,693	+				-2.2
1,614,693	+				+0.7
1,614,697	+				+0.7
1,614,697	+				+1.3
1,614,697	+				+0.6
1,614,698	-				+1.9
1,614,698	-				-1.1
1,614,698	-				+0.5
1,614,701	+				+0.1
1,614,701	+				+0.9
1,614,702	-				-2.0
1,614,702	-				+0.2
1,615,443	+		PP_1415	0.71	-1.5
1,615,443	+		PP_1415	0.71	-0.4
1,615,443	+				+1.0
1,615,443	+		PP_1415	0.71	-1.8
1,615,444	-		PP_1415	0.71	+0.1
1,615,817	-				+0.1
1,615,822	+				+1.5
1,615,982	+		PP_1416	0.16	-0.1
1,615,983	-		PP_1416	0.16	+0.3
1,616,025	+		PP_1416	0.19	+1.2
1,616,026	-		PP_1416	0.19	-1.1
1,616,143	+		PP_1416	0.26	+0.0
1,616,144	-		PP_1416	0.26	+0.3
1,616,144	-		PP_1416	0.26	-1.2
1,616,144	-		PP_1416	0.26	-1.1
1,616,193	+				+0.5
1,616,193	+		PP_1416	0.30	+0.1
1,616,193	+		PP_1416	0.30	+0.1
1,616,193	+		PP_1416	0.30	+0.1
1,616,194	-		PP_1416	0.30	-0.7
1,616,238	-		PP_1416	0.33	-0.3
1,616,417	+		PP_1416	0.44	-1.2
1,616,417	+		PP_1416	0.44	+0.1
1,616,418	-		PP_1416	0.44	+0.1
1,616,538	+		PP_1416	0.52	+0.8
1,616,538	+		PP_1416	0.52	-0.5