Strain Fitness in Pseudomonas putida KT2440 around PP_1267

Experiment: R2A with Polymyxin B sulfate 0.002 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Polymyxin B sulfate 0.002 mg/ml
1,448,262	+				+0.7
1,448,362	+				-0.1
1,448,362	+				-0.7
1,448,362	+				-1.6
1,448,362	+				-2.1
1,448,362	+				-0.1
1,448,362	+				+0.1
1,448,363	-				-0.8
1,448,363	-				-0.1
1,448,363	-				-2.3
1,448,363	-				+0.5
1,448,450	+		PP_1266	0.20	+0.9
1,448,451	-		PP_1266	0.20	+0.4
1,448,451	-		PP_1266	0.20	-1.1
1,448,515	+		PP_1266	0.27	+0.4
1,448,516	-				+0.7
1,448,681	-		PP_1266	0.46	-0.7
1,448,730	+		PP_1266	0.52	-0.3
1,448,731	-		PP_1266	0.52	+0.8
1,448,731	-		PP_1266	0.52	+1.4
1,448,731	-		PP_1266	0.52	+1.0
1,448,758	+		PP_1266	0.55	-2.1
1,448,759	-		PP_1266	0.56	-1.4
1,448,791	+		PP_1266	0.59	+0.4
1,448,792	-		PP_1266	0.59	+2.2
1,448,792	-		PP_1266	0.59	-0.1
1,448,848	+		PP_1266	0.66	-1.3
1,448,965	+		PP_1266	0.79	-1.3
1,448,965	+		PP_1266	0.79	+1.4
1,448,965	+		PP_1266	0.79	+0.2
1,448,965	+		PP_1266	0.79	+1.1
1,448,966	-		PP_1266	0.80	+0.1
1,448,966	-		PP_1266	0.80	+1.3
1,448,966	-		PP_1266	0.80	+0.3
1,448,966	-		PP_1266	0.80	+1.7
1,448,966	-		PP_1266	0.80	-0.3
1,449,111	+				-0.9
1,449,112	-				-0.8
1,449,112	-				+0.6
1,449,120	-				+1.3
1,449,199	+				+0.5
1,449,200	-				+0.6
1,449,200	-				+0.2
1,449,271	-		PP_1267	0.12	-1.0
1,449,296	+		PP_1267	0.18	+0.1
1,449,296	+		PP_1267	0.18	-1.4
1,449,296	+		PP_1267	0.18	+0.3
1,449,296	+		PP_1267	0.18	+0.2
1,449,297	-		PP_1267	0.18	+0.8
1,449,297	-		PP_1267	0.18	-1.1
1,449,297	-		PP_1267	0.18	+0.8
1,449,297	-		PP_1267	0.18	+0.2
1,449,297	-		PP_1267	0.18	+0.5
1,449,297	-		PP_1267	0.18	-1.3
1,449,297	-		PP_1267	0.18	+1.0
1,449,318	-		PP_1267	0.22	-1.5
1,449,464	+		PP_1267	0.53	+0.9
1,449,493	+		PP_1267	0.60	+0.9
1,449,494	-		PP_1267	0.60	-0.6
1,449,531	+		PP_1267	0.68	-0.3
1,449,532	-		PP_1267	0.68	-0.5
1,449,542	-		PP_1267	0.70	-0.6
1,449,549	+		PP_1267	0.72	-2.5
1,449,550	-		PP_1267	0.72	+0.4
1,449,550	-		PP_1267	0.72	+1.1
1,449,552	-		PP_1267	0.72	-0.4
1,449,595	+		PP_1267	0.81	+0.8
1,449,634	+		PP_1267	0.90	+1.7
1,449,634	+		PP_1267	0.90	-1.4
1,449,635	-				-0.5
1,449,635	-				+0.0
1,449,635	-				-0.3
1,449,635	-				-0.2
1,449,652	-				-0.5
1,449,868	-		PP_1268	0.49	-2.5
1,450,008	+		PP_1268	0.85	-1.4
1,450,008	+		PP_1268	0.85	-0.1
1,450,008	+		PP_1268	0.85	-0.3
1,450,009	-		PP_1268	0.85	-2.1
1,450,009	-		PP_1268	0.85	+0.8
1,450,032	-				-0.7
1,450,032	-				-0.8
1,450,079	+				-0.6
1,450,080	-				+0.3
1,450,080	-				-0.2
1,450,366	-		PP_1269	0.60	+0.0